Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00014 ATGTCATTTGTTTTCTCATCCCTTTCTCTCATGCACTCTGCCACTGGTTTTTTCCTCGAACCCATTTTCCTTCATGGCTTATCTGGCTTCCTCCATCTACTATTGCTAGTGGTGGTTTTAGTGTTATGGGTTTGGAAGAAAATAACAGTGGGTGCTAGAGATGAGTCTAAGGAGAAATCCAAGAACACCCTGTTTACGATAACAAAGTTTTGTTCTCTGGGTGTTTTTGCTTTCAATCTTGTCCTCTGCCTTTTTAATTACTTCTATTGGTATAGAAGTGGTTGGTCGGAAGAAAAGCTCGTGACCCTTTTGGATTTAGCGCTCAAAACAGTTGCTTGGGTTGTTGTTTACGTTTGCTTGCATAAGGGATTCTTCAGTTCAGGTGAAAGAAGATTTTCGTTCATCTTCAGAGCTTGGTGCGCTTTCTACCTCTTTATTTCTTGTTATTGCTTTGTAGTGGACATAGTTCTTCTCTATGAAAAACATGTCGCTTTACCAGCTCAGTTCATAGTTTCTGATGTGGTATCTGTTTGTGCGGGTTTGTTCTTCTGTTACGTGGGGTATTTTGTGAAAAATGAGGGTGAAGATATCAGTCTTCGAGAACCTCTTTTGAATGGTGATACAAATGCTAGTAATGCCTCGGGGTCAAAAGAGACCAAGGGGGGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGGTGGGTCCTCTCATTGCTGTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCACAACTCGACGGCAGAGAGAGTGTAGTTGGAGCTTTTCCAACTTTCAGAGATGGACTTGAGGCTGAATGTGGTGCAATTAACAACGTGACCACACTCAAGCTGGTGAAGTCATTATTAATCTCAGCATGGAAGGAGATTCTTTTCACAGCTTTTCTTGCATTGATAAACACCTTGGCTTCTTATGTTGGTCCTTATCTTATTGATGCTTTTGTTCAATACCTCGATGGAAGACGGCTCTATGAAAATCAGGGCTATGTTTTGGTTTCTGCATTTTTCTTCGCAAAGCTCGTGGAGTCACTGCTTGTGACAATGATCTATAATAAAGCCTTGACCCTTTCATGTCAATCAAAGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGTGACTTCAGTTGGTACATGCATGATTTGTGGATGGTAGCTCTGCAAGTTTCGTTAGCCTTGTTGATTTTATATAAAAACCTTGGGCTAGCTTCAATTGCTGCTTTAGTTGCAACTGTAATTGTAATGTTGGCAAATGTTCCCTTAGGATCATTGCAAGAGAAGTTTCAAGACAAGCTGATGGAGTCAAAGGATAAAAGAATGAAGGCCACGTCTGAGGTTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAATTTCTATCTAAAATAACTGAGCTCAGGAAAACTGAGCAAGGCTGGTTAAAAAAATATGTTTATACTTCAGCCATGACCGCATTTGTGTTTTGGGGTGCCCCCACATTTGTATCTGTTGTTACATTTGGTACTTGTATGCTTATAGGAATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAAGAGCCCATTTATAATCTTCCTGATACAATTTCAATGATAGCACAAACTAAGGTTTCTCTTGATAGGATTGCCTCATTCATTCGTCTTGATGACTTGCAGTCCGATGTTGTAGAGAAGCTTCCTCGGGATAGTTCTGATACAGCAATTGAAGTAGTTGATGGAAAATTCTCTTGGGATTTATCTTCCCCTAATTCAACGTTGCAAAACATAAATCTTAGAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGGTATCGGGCATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAAACCCATGGACAGGGAAAGGTATGAAAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGACCTGGAGATTTTGTCATTTGGTGATCAGACAGTTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCCGACACATATCTATTTGATGATCCCTTTAGCGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAGTGCTTACTGGGTCTTTTAAGTTTAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATATTGGTAATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATAATGATCTGCTTAACATTGGGACTGATTTTCTGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTGATGAAATAAGTAGCTTAGAACAAGATGTAAATGTCTCTGGCACTCATGATGTTAAAGAAAAAGAAGCAAAAGAAGATGAGAAAAATGGTAAAAGTGACGACAAAGGTGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACCACTGCATATGGAGGAGCTCTTGTGCCAATCATATTGTTGGCTCAGATTCTTTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCATCAGATGTTGAGCCACCAGTTGGAGGAACGACCCTTATAGCAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTTGTCAGATCTATGCTTCTTGCCACAGCTGGTTATAAGACAGCTACTCTACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCCCCAATGTCATTTTTTGATTCCACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGATACAGGCATACCCTACCAAATTGCTTCATTTGCCTTCTCCATGATCCAGCTTCTGGGAATTATAGCAGTTATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAATCAGCATCTGGTATCAGCAATATTATTTACCAGCAGCCCGAGAACTATCACGTTTAGTTGGAGTATGCAAAGCTCCAATCATTCAACACTTCGCCGAAACAATTTCTGGTACGTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAACAAATATGAAACTGACGGATGGGTATTCTCGGCCGAAGTTCAATATTGCTGGTGCTATGGAATGGCTGTGCTTCCGCTTAGATATGTTGTCTTCTTTAACATTTGTCTTTTCCTTGATATTCTTGATATCAATTCCACAGGGAGTCATAGATCCTGGCCTTGCTGGTTTAGCTGTTACCTACGGACTTAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTAGCATTCCTAGTGAACCTCCCCTTGTTGTAGAAGAAACTAGACCAGATCCTTCTTGGCCGTCATACGGCGAGGTTAATATACAAGACTTGCAGGTTCGTTATGCTCCACATCTTCCGCTTGTTTTGCGTGGCCTTACATGCACGTTTCGTGGAGGATTGAAAACTGGCATTGTTGGGAGAACAGGAAGCGGTAAATCAACTCTCATACAAACACTTTTCCGAATTGTTGAACCTACTGCTGGGCAAGTTATGATAGACAGCATCAACATCTCCTCAATCGGACTTCATGATTTGAGGTCTAGATTAAGTATTATTCCTCAGGATCCAACCATGTTTGAAGGGACAGTGAGAAATAATCTGGATCCCCTGGAAGAGTACACTGATGAACAAATTTGGCAGGCCCTGGAGAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCAGCAGTTAGTGAGAACGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTCTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACTGCTACAGATAATTTGATTCAGCAAACTCTTAGACAACATTTCTCTGACTCTACAGTAATTACCATTGCACATCGAATTACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTCATTGAGGAGTATGACTCCCCAACAACATTGCTAGGGGATAGGTCATCATCTTTTGCTCAACTTGTTGCCGAGTATACCGTGAGGTCCAACTCCAGTTTTGAAAAATCTGATGATCACTGA 4449 0.4109 MSFVFSSLSLMHSATGFFLEPIFLHGLSGFLHLLLLVVVLVLWVWKKITVGARDESKEKSKNTLFTITKFCSLGVFAFNLVLCLFNYFYWYRSGWSEEKLVTLLDLALKTVAWVVVYVCLHKGFFSSGERRFSFIFRAWCAFYLFISCYCFVVDIVLLYEKHVALPAQFIVSDVVSVCAGLFFCYVGYFVKNEGEDISLREPLLNGDTNASNASGSKETKGGDTVTPFSNAGIFSILTFSWVGPLIAVGNKKTLDLEDVPQLDGRESVVGAFPTFRDGLEAECGAINNVTTLKLVKSLLISAWKEILFTAFLALINTLASYVGPYLIDAFVQYLDGRRLYENQGYVLVSAFFFAKLVESLLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGDFSWYMHDLWMVALQVSLALLILYKNLGLASIAALVATVIVMLANVPLGSLQEKFQDKLMESKDKRMKATSEVLRNMRILKLQGWEMKFLSKITELRKTEQGWLKKYVYTSAMTAFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFIRLDDLQSDVVEKLPRDSSDTAIEVVDGKFSWDLSSPNSTLQNINLRVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKVSGILKVCGTKAYVAQSPWIQSGKIEDNILFGKPMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADTYLFDDPFSAVDAHTGSHLFKECLLGLLSLKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNIGTDFLELVGAHKKALSTLDSLDGGTVSDEISSLEQDVNVSGTHDVKEKEAKEDEKNGKSDDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPIILLAQILFQVLQIGSNYWMAWATPISSDVEPPVGGTTLIAVYVGLAIGSSFCILVRSMLLATAGYKTATLLFNKMHFCIFRAPMSFFDSTPSGRILNRASTDQSAVDTGIPYQIASFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQYYLPAARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSLTFVFSLIFLISIPQGVIDPGLAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPSEPPLVVEETRPDPSWPSYGEVNIQDLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWQALEKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLGDRSSSFAQLVAEYTVRSNSSFEKSDDH 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00014 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 825 IPR003439 GO:0005524
Gabi3551g00014 1482 MobiDBLite consensus disorder prediction 855 889 - -
Gabi3551g00014 1482 CDD ABCC_MRP_domain1 602 802 - -
Gabi3551g00014 1482 Pfam ABC transporter transmembrane region 915 1157 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00014 1482 Pfam ABC transporter transmembrane region 356 555 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00014 1482 FunFam ABC transporter C family member 5 587 834 - -
Gabi3551g00014 1482 Gene3D - 581 836 IPR027417 -
Gabi3551g00014 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 361 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00014 1482 CDD ABCC_MRP_domain2 1230 1450 - -
Gabi3551g00014 1482 Gene3D - 1215 1468 IPR027417 -
Gabi3551g00014 1482 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1466 IPR003439 GO:0005524
Gabi3551g00014 1482 FunFam ABC transporter C family member 3 1215 1467 - -
Gabi3551g00014 1482 Pfam ABC transporter 1250 1397 IPR003439 GO:0005524
Gabi3551g00014 1482 CDD ABC_6TM_ABCC_D2 913 1207 IPR044726 GO:0140359
Gabi3551g00014 1482 FunFam ABC transporter C family member 10 290 584 - -
Gabi3551g00014 1482 FunFam ABC transporter C family member 5 876 1213 - -
Gabi3551g00014 1482 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 228 1467 - -
Gabi3551g00014 1482 ProSitePatterns ABC transporters family signature. 727 741 IPR017871 GO:0005524|GO:0016887
Gabi3551g00014 1482 SMART AAA_5 1258 1450 IPR003593 GO:0016887
Gabi3551g00014 1482 SMART AAA_5 629 802 IPR003593 GO:0016887
Gabi3551g00014 1482 MobiDBLite consensus disorder prediction 853 889 - -
Gabi3551g00014 1482 Pfam ABC transporter 620 754 IPR003439 GO:0005524
Gabi3551g00014 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 824 IPR027417 -
Gabi3551g00014 1482 CDD ABC_6TM_ABCC_D1 308 576 IPR044746 GO:0140359
Gabi3551g00014 1482 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 915 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00014 1482 Gene3D ABC transporter type 1, transmembrane domain 286 580 IPR036640 GO:0005524|GO:0016020
Gabi3551g00014 1482 Gene3D ABC transporter type 1, transmembrane domain 876 1213 IPR036640 GO:0005524|GO:0016020
Gabi3551g00014 1482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1462 IPR027417 -
Gabi3551g00014 1482 SUPERFAMILY ABC transporter transmembrane region 912 1214 IPR036640 GO:0005524|GO:0016020
Gabi3551g00014 1482 SUPERFAMILY ABC transporter transmembrane region 297 580 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00014 Gabi-Chr3551 80518 86911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00014 596 832 Calmodulin-binding Proteins AT2G36910 29.572 3.54e-23 105