Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00013 ATGTCATTTGTTTTCTCATCCCTTTCTCTCATGCACTCTGCCACTGGTTTTTTCCTCGAACCCATTTTCCTTCATGGCTTATCTGGCTTCCTCCATCTACTATTGCTAGTGGTGGTTTTAGTGTTATGGGTTTGGAAGAAAATAACAGTGGGTGCTAGAGATGAGTCTAAGGAGAAATCCAAGAACACCCTGTTTACGATAACAAAGTTTTGTTCTCTGGGTGTTTTTGCTTTCAATCTTGTCCTCTGCCTTTTTAATTACTTCTATTGGTATAGAAGTGGTTGGTCGGAAGAAAAGCTCGTGACCCTTTTGGATTTAGCGCTCAAAACAGTTGCTTGGGTTGTTGTTTACGTTTGCTTGCATAAGGGATTCTTCAGTTCAGGTGAAAGAAGATTTTCGTTCATCTTCAGAGCTTGGTGCGCTTTCTACCTCTTTATTTCTTGTTATTGCTTTGTAGTGGACATAGTTCTTCTCTATGAAAAACATGTCGCTTTACCAGCTCAGTTCATAGTTTCTGATGTGGTATCTGTTTGTGCGGGTTTGTTCTTCTGTTACGTGGGGTATTTTGTGAAAAATGAGGGTGAAGATATCAGTCTTCGAGAACCTCTTTTGAATGGTGATACAAATGCTAGTAATGCCTCGGGGTCAAAAGAGACCAAGGGGGGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTCAGCATTCTTACCTTCTCTTGGGTGGGTCCTCTCATTGCTGTTGGCAATAAGAAGACCTTAGACCTTGAGGATGTCCCACAACTCGACGGCAGAGAGAGTGTAGTTGGAGCTTTTCCAACTTTCAGAGATGGACTTGAGGCTGAATGTGGTGCAATTAACAACGTGACCACACTCAAGCTGGTGAAGTCATTATTAATCTCAGCATGGAAGGAGATTCTTTTCACAGCTTTTCTTGCATTGATAAACACCTTGGCTTCTTATGTTGGTCCTTATCTTATTGATGCTTTTGTTCAATACCTCGATGGAAGACGGCTCTATGAAAATCAGGGCTATGTTTTGGTTTCTGCATTTTTCTTCGCAAAGCTCGTGGAGTGCCTGTCGCAAAGGCATTGGTTCTTTAGGTTGCAGCAAGTTGGAATTCGAATCCGAGCACTGCTTGTGACAATGATCTATAATAAAGCCTTGACCCTTTCATGTCAATCAAAGCAGGGCCACACTTCTGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGTGACTTCAGTTGGTACATGCATGATTTGTGGATGGTAGCTCTGCAAGTTTCGTTAGCCTTGTTGATTTTATATAAAAACCTTGGGCTAGCTTCAATTGCTGCTTTAGTTGCAACTGTAATTGTAATGTTGGCAAATGTTCCCTTAGGATCATTGCAAGAGAAGTTTCAAGACAAGCTGATGGAGTCAAAGGATAAAAGAATGAAGGCCACGTCTGAGGTTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAATTTCTATCTAAAATAACTGAGCTCAGGAAAACTGAGCAAGGCTGGTTAAAAAAATATGTTTATACTTCAGCCATGACCGCATTTGTGTTTTGGGGTGCCCCCACATTTGTATCTGTTGTTACATTTGGTACTTGTATGCTTATAGGAATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCCGGATTCTTCAAGAGCCCATTTATAATCTTCCTGATACAATTTCAATGATAGCACAAACTAAGGTTTCTCTTGATAGGATTGCCTCATTCATTCGTCTTGATGACTTGCAGTCCGATGTTGTAGAGAAGCTTCCTCGGGATAGTTCTGATACAGCAATTGAAGTAGTTGATGGAAAATTCTCTTGGGATTTATCTTCCCCTAATTCAACGTTGCAAAACATAAATCTTAGAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGGTATCGGGCATCCTTAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAAACCCATGGACAGGGAAAGGTATGAAAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGACCTGGAGATTTTGTCATTTGGTGATCAGACAGTTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCCGACACATATCTATTTGATGATCCCTTTAGCGCTGTGGATGCTCATACAGGATCTCACCTCTTTAAGGAGTGCTTACTGGGTCTTTTAAGTTTAAAGACAGTGGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGACCTTATATTGGTAATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATAATGATCTGCTTAACATTGGGACTGATTTTCTGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACACTTGATTCATTGGATGGAGGGACAGTATCTGATGAAATAAGTAGCTTAGAACAAGATGTAAATGTCTCTGGCACTCATGATGTTAAAGAAAAAGAAGCAAAAGAAGATGAGAAAAATGGTAAAAGTGACGACAAAGGTGAACCAAAAGGCCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAATATATCACCACTGCATATGGAGGAGCTCTTGTGCCAATCATATTGTTGGCTCAGATTCTTTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCATCAGATGTTGAGCCACCAGTTGGAGGAACGACCCTTATAGCAGTCTATGTTGGTTTGGCCATTGGAAGTTCTTTCTGCATCCTTGTCAGATCTATGCTTCTTGCCACAGCTGGTTATAAGACAGCTACTCTACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCCCCAATGTCATTTTTTGATTCCACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTACTGACCAAAGTGCAGTGGATACAGGCATACCCTACCAAATTGCTTCATTTGCCTTCTCCATGATCCAGCTTCTGGGAATTATAGCAGTTATGTCTCAGGTTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAATCAGCATCTGGTATCAGCAATATTATTTACCAGCAGCCCGAGAACTATCACGTTTAGTTGGAGTATGCAAAGCTCCAATCATTCAACACTTCGCCGAAACAATTTCTGGTACGTCAACCATTAGAAGCTTTGATCAGCAGTCAAGATTTCAGGAAACAAATATGAAACTGACGGATGGGTATTCTCGGCCGAAGTTCAATATTGCTGGTGCTATGGAATGGCTGTGCTTCCGCTTAGATATGTTGTCTTCTTTAACATTTGTCTTTTCCTTGATATTCTTGATATCAATTCCACAGGGAGTCATAGATCCTGGCCTTGCTGGTTTAGCTGTTACCTACGGACTTAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTAGCATTCCTAGTGAACCTCCCCTTGTTGTAGAAGAAACTAGACCAGATCCTTCTTGGCCGTCATACGGCGAGGTTAATATACAAGACTTGCAGGTTCGTTATGCTCCACATCTTCCGCTTGTTTTGCGTGGCCTTACATGCACGTTTCGTGGAGGATTGAAAACTGGCATTGTTGGGAGAACAGGAAGCGGTAAATCAACTCTCATACAAACACTTTTCCGAATTGTTGAACCTACTGCTGGGCAAGTTATGATAGACAGCATCAACATCTCCTCAATCGGACTTCATGATTTGAGGTCTAGATTAAAGTACACTGATGAACAAATTTGGCAGGCCCTGGAGAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCAGCAGTTAGTGAGAACGGTGAGAATTGGAGTATGGGTCAGAGGCAGTTGGTCTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACTGCTACAGATAATTTGATTCAGCAAACTCTTAGACAACATTTCTCTGACTCTACAGTAATTACCATTGCACATCGAATTACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTCATTGAGGAGTATGACTCCCCAACAACATTGCTAGGGGATAGGTCATCATCTTTTGCTCAACTTGTTGCCGAGTATACCGTGAGGTCCAACTCCAGTTTTGAAAAATCTGATGATCACTGA 4440 0.4115 MSFVFSSLSLMHSATGFFLEPIFLHGLSGFLHLLLLVVVLVLWVWKKITVGARDESKEKSKNTLFTITKFCSLGVFAFNLVLCLFNYFYWYRSGWSEEKLVTLLDLALKTVAWVVVYVCLHKGFFSSGERRFSFIFRAWCAFYLFISCYCFVVDIVLLYEKHVALPAQFIVSDVVSVCAGLFFCYVGYFVKNEGEDISLREPLLNGDTNASNASGSKETKGGDTVTPFSNAGIFSILTFSWVGPLIAVGNKKTLDLEDVPQLDGRESVVGAFPTFRDGLEAECGAINNVTTLKLVKSLLISAWKEILFTAFLALINTLASYVGPYLIDAFVQYLDGRRLYENQGYVLVSAFFFAKLVECLSQRHWFFRLQQVGIRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGDFSWYMHDLWMVALQVSLALLILYKNLGLASIAALVATVIVMLANVPLGSLQEKFQDKLMESKDKRMKATSEVLRNMRILKLQGWEMKFLSKITELRKTEQGWLKKYVYTSAMTAFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFIRLDDLQSDVVEKLPRDSSDTAIEVVDGKFSWDLSSPNSTLQNINLRVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKVSGILKVCGTKAYVAQSPWIQSGKIEDNILFGKPMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADTYLFDDPFSAVDAHTGSHLFKECLLGLLSLKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYNDLLNIGTDFLELVGAHKKALSTLDSLDGGTVSDEISSLEQDVNVSGTHDVKEKEAKEDEKNGKSDDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPIILLAQILFQVLQIGSNYWMAWATPISSDVEPPVGGTTLIAVYVGLAIGSSFCILVRSMLLATAGYKTATLLFNKMHFCIFRAPMSFFDSTPSGRILNRASTDQSAVDTGIPYQIASFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIAISIWYQQYYLPAARELSRLVGVCKAPIIQHFAETISGTSTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSLTFVFSLIFLISIPQGVIDPGLAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPSEPPLVVEETRPDPSWPSYGEVNIQDLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRSRLKYTDEQIWQALEKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLGDRSSSFAQLVAEYTVRSNSSFEKSDDH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00013 1479 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524|GO:0016887
Gabi3551g00013 1479 FunFam AGAP012735-PA 1345 1467 - -
Gabi3551g00013 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 844 IPR003439 GO:0005524
Gabi3551g00013 1479 MobiDBLite consensus disorder prediction 874 908 - -
Gabi3551g00013 1479 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Gabi3551g00013 1479 FunFam ABC transporter C family member 5 606 853 - -
Gabi3551g00013 1479 SMART AAA_5 648 821 IPR003593 GO:0016887
Gabi3551g00013 1479 SMART AAA_5 1277 1447 IPR003593 GO:0016887
Gabi3551g00013 1479 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Gabi3551g00013 1479 MobiDBLite consensus disorder prediction 872 908 - -
Gabi3551g00013 1479 SUPERFAMILY ABC transporter transmembrane region 297 599 IPR036640 GO:0005524|GO:0016020
Gabi3551g00013 1479 FunFam ABC transporter C family member 5 895 1232 - -
Gabi3551g00013 1479 Gene3D ABC transporter type 1, transmembrane domain 286 599 IPR036640 GO:0005524|GO:0016020
Gabi3551g00013 1479 Gene3D ABC transporter type 1, transmembrane domain 895 1232 IPR036640 GO:0005524|GO:0016020
Gabi3551g00013 1479 CDD ABCC_MRP_domain1 621 821 - -
Gabi3551g00013 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1251 1463 IPR003439 GO:0005524
Gabi3551g00013 1479 Gene3D - 1330 1465 IPR027417 -
Gabi3551g00013 1479 Gene3D - 1234 1329 IPR027417 -
Gabi3551g00013 1479 Pfam ABC transporter transmembrane region 307 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00013 1479 Pfam ABC transporter transmembrane region 934 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00013 1479 Gene3D - 600 855 IPR027417 -
Gabi3551g00013 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00013 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1459 IPR027417 -
Gabi3551g00013 1479 SUPERFAMILY ABC transporter transmembrane region 931 1233 IPR036640 GO:0005524|GO:0016020
Gabi3551g00013 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3551g00013 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 843 IPR027417 -
Gabi3551g00013 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 228 1464 - -
Gabi3551g00013 1479 Pfam ABC transporter 1269 1394 IPR003439 GO:0005524
Gabi3551g00013 1479 CDD ABCC_MRP_domain2 1249 1447 - -
Gabi3551g00013 1479 FunFam ABC transporter C family member 10 290 603 - -
Gabi3551g00013 1479 CDD ABC_6TM_ABCC_D2 932 1226 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00013 Gabi-Chr3551 80518 86911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00013 615 851 Calmodulin-binding Proteins AT2G36910 29.572 3.10e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00013 - K05666 gmx:100777836 2502.24