Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3548g00001 ATGGGTCGGTGCCGAACCGCGTCGCGCTCCGGTGACGATGATCCGAACCAAAGATACAAGAGAAAAAAGGCTTCTTTGAATGTGGAGAATTTAGAGACTTTGCCTACTGGCAAAGGAATAACTGATGGCAAGGTATCTCTGTATCACTGTAATTACTGCAACAAAGATATTTCAGGGAAGATTCGCATCAAGTGTGCTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTTTCTGTTGGGGCTGAGGTGACACCTCACAAAAGTAATCATCCATATCGGATTATGGATAATCTATCTTTTCCACTTATATGTCCAGACTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAGTATCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATATTTCCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCCTTGCCATGGCAAAGAGACATGAAGTCAAGAAAGAACTTCCTCCAACTGCAGAGCTTACTCTGAAAGAAGAATCTCCCTTCTCCGATGGAATAAACTCTGAAGCAGAAACCACTAATCGAACAATGTCTAGGTTAAACTCAGTTTGTGGAAAAGCTTACTCAAGTACAATTATGAAAGCTTTCGATGTAAGCCATAATGCTGGAGTTAAGGTGGAAGGGTAA 741 0.4076 MGRCRTASRSGDDDPNQRYKRKKASLNVENLETLPTGKGITDGKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGAEVTPHKSNHPYRIMDNLSFPLICPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKYQCIDHYNAVYMNSPYFPLPDLSHVMGKSREELLAMAKRHEVKKELPPTAELTLKEESPFSDGINSEAETTNRTMSRLNSVCGKAYSSTIMKAFDVSHNAGVKVEG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3548g00001 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gabi3548g00001 246 SUPERFAMILY RING/U-box 48 111 - -
Gabi3548g00001 246 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gabi3548g00001 246 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Gabi3548g00001 246 Gene3D - 43 96 IPR043145 -
Gabi3548g00001 246 FunFam Transcriptional adapter 2 101 153 - -
Gabi3548g00001 246 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gabi3548g00001 246 SMART zz_5 44 89 IPR000433 GO:0008270
Gabi3548g00001 246 Gene3D - 106 155 - -
Gabi3548g00001 246 Pfam Zinc finger, ZZ type 48 88 IPR000433 GO:0008270
Gabi3548g00001 246 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gabi3548g00001 246 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Gabi3548g00001 246 CDD ZZ_ADA2 48 96 IPR041983 -
Gabi3548g00001 246 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 204 - -
Gabi3548g00001 246 SMART sant 104 153 IPR001005 -
Gabi3548g00001 246 CDD SANT 108 148 IPR001005 -
Gabi3548g00001 246 FunFam Transcriptional adapter 41 96 - -
Gabi3548g00001 246 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3548g00001 Gabi-Chr3548 6586 16319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3548g00001 1 236 EF-hand Containing Proteins AT3G07740 51.613 5.33e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi3548g00001 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3548g00001 K11314 - gmx:100811839 404.831