Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3546g00003 ATGTCTTCTCAAGGATGTGATCATAAGGGTTATGGCATCCACTTTTTCAAGGTTATTCTTGAAAGCAACATTCGAAATGGAGAGCTGAGAGTGCCAAGAAGTTTTGTGAGGAGATATTGGCAAGCAATATCAAACCCTGTTTGTCTAAGGCTTCCAAATAGCATTGAATGGAAAGTTTATTGGATGAAACGTGATGGTGATGTTTGGTTTCGCAATGGTTGGAAAGAATTTGCACAATACTTGTCTTTGGATGTGTCACAGTTTGTGGTGTTTCGTTATGAAGAAAATTCTCACTTTAATGTGATTATATTTGATAAGAGTGCTTTAGAAATAAAATACCCTTCTAGAGTTGCTGATGAAAAAAGTGAAGAGGTTGATGAGAGTGATTATTCTTTGAAAATTCTTGAGGATTGTTCACCATTCGAGGTTAAAAGGGAAAAATCTCCATCTTCTCGAACTCGTAAGAAGATGAAAATCAACCCAAAAGAAGAACAAGCTGATGCAGGTTTTGATAATACTAATAAACACATGGACAGTGGTAGTACAAGAGATCTTAAGAAGAGAATCAGAACTTTTCACGAGAAAGTGAAGAGGAATTTCCGCTCTGAGAATGATTTTTTCACTTGTGCAATCCAGAAAACAAGCACAGAAAGAGATAGCTTGATCATACCAAACGAATTTTCTAAATCAAAGCTTCAAAGAAAGGAAGGAAATGCTACCCTTTTTGTTAACAAGGAAAGGACATGGAATGTCGAATTGAAGCTCTTTCACAATGGACAATTATCAGTTACCCGTGGTTGGAAGAAATTTTTCTTGGACAATAATTTGAAATTGGGTGATGTTTGTGCATTTGTGCTAAACAAAGGCAAAGGAGTTTCATTCAAAGTTGTTATTTTTGCTCTTGAAGAGGACTCAAGCACTCTACTCTTTAAAGACAAAGAGGGGCTTTCTCATAAGCCTTCTTCATTTCTTAAAACTCCTGAAACTCCTCAAACTAACAGAAGATTAATGTTGAAGAATGACTTCATCTTCTACGTCAAGCCTCCATTGCATATTGCGACAATACCAATCAACTTCGTTCGGAGTAACCTTACACATGGAAGATATGCAACCTTGCAAGTTGGGAAGAGATCATGGTCTGTAAAAGTGCTCTATTATGAATATACTTCCTGTGTTAAATTCTCTCGAGGTTGGCATGATTTTGTGAGGGATTGTAACTTGAAAGTTGGTGATGCTTGTCACTGTAAGATGATAGATGAAGAAAATTTTGTGCTTCAAGTTTCAATTTCAAGACGCACCTGTTAA 1305 0.3648 MSSQGCDHKGYGIHFFKVILESNIRNGELRVPRSFVRRYWQAISNPVCLRLPNSIEWKVYWMKRDGDVWFRNGWKEFAQYLSLDVSQFVVFRYEENSHFNVIIFDKSALEIKYPSRVADEKSEEVDESDYSLKILEDCSPFEVKREKSPSSRTRKKMKINPKEEQADAGFDNTNKHMDSGSTRDLKKRIRTFHEKVKRNFRSENDFFTCAIQKTSTERDSLIIPNEFSKSKLQRKEGNATLFVNKERTWNVELKLFHNGQLSVTRGWKKFFLDNNLKLGDVCAFVLNKGKGVSFKVVIFALEEDSSTLLFKDKEGLSHKPSSFLKTPETPQTNRRLMLKNDFIFYVKPPLHIATIPINFVRSNLTHGRYATLQVGKRSWSVKVLYYEYTSCVKFSRGWHDFVRDCNLKVGDACHCKMIDEENFVLQVSISRRTC 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3546g00003 434 SUPERFAMILY DNA-binding pseudobarrel domain 201 300 IPR015300 -
Gabi3546g00003 434 SUPERFAMILY DNA-binding pseudobarrel domain 353 431 IPR015300 -
Gabi3546g00003 434 PANTHER B3 DOMAIN-CONTAINING 200 421 - -
Gabi3546g00003 434 SUPERFAMILY DNA-binding pseudobarrel domain 14 107 IPR015300 -
Gabi3546g00003 434 CDD B3_DNA 218 299 IPR003340 GO:0003677
Gabi3546g00003 434 Gene3D - 11 108 IPR015300 -
Gabi3546g00003 434 MobiDBLite consensus disorder prediction 156 184 - -
Gabi3546g00003 434 SMART B3_2 206 302 IPR003340 GO:0003677
Gabi3546g00003 434 SMART B3_2 345 433 IPR003340 GO:0003677
Gabi3546g00003 434 SMART B3_2 15 107 IPR003340 GO:0003677
Gabi3546g00003 434 Pfam B3 DNA binding domain 15 106 IPR003340 GO:0003677
Gabi3546g00003 434 Pfam B3 DNA binding domain 354 432 IPR003340 GO:0003677
Gabi3546g00003 434 Pfam B3 DNA binding domain 206 299 IPR003340 GO:0003677
Gabi3546g00003 434 ProSiteProfiles B3 DNA-binding domain profile. 377 433 IPR003340 GO:0003677
Gabi3546g00003 434 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Gabi3546g00003 434 CDD B3_DNA 14 105 IPR003340 GO:0003677
Gabi3546g00003 434 ProSiteProfiles B3 DNA-binding domain profile. 206 302 IPR003340 GO:0003677
Gabi3546g00003 434 MobiDBLite consensus disorder prediction 145 184 - -
Gabi3546g00003 434 Gene3D - 311 433 IPR015300 -
Gabi3546g00003 434 Gene3D - 187 303 IPR015300 -
Gabi3546g00003 434 CDD B3_DNA 354 431 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3546g00003 Gabi-Chr3546 39873 42824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3546g00003 352 431 B3 DNA Binding Superfamily AT3G18990 30.864 1.81e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3546g00003 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3546g00003 - - lang:109332968 454.136