Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3544g00004 ATGGAAGATGGCAAGCCTTCAGCTGTCCCGGTCGATAACGGCGACCAAGCTGAGTCTCGATTCGCCGAGTTTTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATTAATCTGTTTGGAGAAACCAAGCATCTTCTACTGACAAATATTTCGGCAATGGGGAATGGAACGTCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTTATACTCTGTAAAGAGATTGACTCAGAAAGTTGAGGAGAGTGAGAATGAAGAGACTGAGAGCACTGGGCTTACCTTGTGCCGTATATTGAGGGCAGCTAAGCTTAACATTGGAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTTAAGGCTGGTCCTATTTTAAGTAATCTATATGGCACAGATTGGGAAAGCAGGCTTGAGGCAAAGGAGATGCACGCCAATGCTATTCACTTGAAGATTCTTAGCAAGTACTATAAACGTGTATTTGAAGAGTTCTTCGTGGCAACTGATGCAAATGTTGAAAAAAGCTCATCTGTCACTGCTCATGCATCTGAATACCATCGCTTTGGATGGTTACTTTTTTTGGCACTTCGTGTACATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACAAATGGTTTAATTTCGATCTTGGCTATCTTAATTATTCATGTTCCTGCTCGTTTTCGGAATTTCAACATTCATGATTCTTCACGCTTTGTTAAGAAGAGTAACAAAGGTGTGGACCTCCTTGCATCACTCTGCAACATCTATAATACTTCAGAAGATGAGTTGAAGAAAACCATGGAGAAAGCCAATAATTTAATAGCATATATATTGAAGAAGCAGCCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAATTTTGATAGAGATGGTTTGATTTTTTTTAAAGATCTGATAGAGGAATCATCTTTGCCACCAAGTTTACATATCTTAGAAAAAGATTATGATTACATGATTCGCAACAAGGGTGAACTGGATGAGAGGTTATTCATTAATGAAGACGACAGCCTGTTAGCTTCAGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAAGTGGTGTAAAGAGGAAATTTGATTCGATGGCATCACCTGCTAAAACTATTACAAGTCCCCTCTCACCTCACCGTTCTCCTGCATCCCATGCTAATGGCATTCTGGGTGCTGCAAATTCAAAGATGGCAGCCACCCCTGTAAGCACTGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTGTCCACTTGCATCATGGCCCTCACAAGAGCTGGAGAGATTCTTGACATCGTGTGACAGGGATGTTACAAGTGATGTGGTGCGCAGAGCGCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTTGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCGGAACAACGAAGATTGGAAGCAATGAAGTTATACTTTAGGGTATTGGAAGCAATGTGTAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCGCTTCTAACTAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTTACAATGTTGTTCCCTGCAGTACTGGAGAGGACTGGAATTACGGCTTTTGATCTTAGCAAGGTGATTGAAAGTTTCATCAGACATGAAGAATCCCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTCTTGGAGAGCATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGGCAGTTGCTAGACCTGCGCTTTCTGCAGAAATAAACCGTCTTAAACTGCTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATACGAGCTTTTCTTGTGGAGGGCTGCCTCCTGTGCCGTGTTTGCCTAGGATTGAGACTTCACCAACTCAGAATGGGGATACCAGATCACCAAAGCATTCTGAATATCGAAATGTGTTAATGGAGAGAAATTGTTTTAATTCACCAGCGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAGGCTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACTAAACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACCGGGATCAACATCTTTTTCAGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTGCACAAATAAAGGAGAATGTGTTCTGTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGCCATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCGAAGATTTCACAACTGAACCTAACTTTCAGGGAGATCATATACAACTATAGAAAGCAACCGCAATGCAAACCACAAGTTTTCCGTAGTGTATTTGTTGATTGGTCATTGTCACGGCGTAATGGGAGAACAGGACAGGAACATGTTGATATCATTACATTTTACAATGAAATATTCATTCCTTCTGTAAAGCCGCTGCTTGTTGAACTTGGCCCTGGTGGAACAACTATGAAAAGGGACCAGATACCTGAAGTTAATAATAAAAGTGACGGCCATTTAGCACAATGTCCCGGGTCTCCTAAAATATCACCTTTCCCAAGCCTACCTGATATGTCTCCAAAAAAGGTGTCTGCCACACACAATGTATATGTCTCTCCATTACGATCATCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGTAACCGGAAGGTTAGAGGTTCCCTCAATTTTGATGAAGTTGATGCGGGCTTGGTTAGTGACACTATGGTTGCAAACAGCCTCTATCTGCCGAATGGAAGTTGTGCATCATCTTCAGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3042 0.4221 MEDGKPSAVPVDNGDQAESRFAEFCKNGLALEEKSCKEAINLFGETKHLLLTNISAMGNGTSEEAERYWFAFILYSVKRLTQKVEESENEETESTGLTLCRILRAAKLNIGDFFKELPQFVVKAGPILSNLYGTDWESRLEAKEMHANAIHLKILSKYYKRVFEEFFVATDANVEKSSSVTAHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELKKTMEKANNLIAYILKKQPCLASECETENLENFDRDGLIFFKDLIEESSLPPSLHILEKDYDYMIRNKGELDERLFINEDDSLLASGSLSGGSVSASGVKRKFDSMASPAKTITSPLSPHRSPASHANGILGAANSKMAATPVSTAMTTAKWLRTVICPLASWPSQELERFLTSCDRDVTSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEAMKLYFRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLKLLAEPMPSLDEIAMHTSFSCGGLPPVPCLPRIETSPTQNGDTRSPKHSEYRNVLMERNCFNSPAKDRLLPFSNLKSRLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFSKIIKLGAVRISGMVERLQLSAQIKENVFCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLSRRNGRTGQEHVDIITFYNEIFIPSVKPLLVELGPGGTTMKRDQIPEVNNKSDGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGSLNFDEVDAGLVSDTMVANSLYLPNGSCASSSGAPLKSEQPDS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3544g00004 1013 SUPERFAMILY Cyclin-like 416 611 IPR036915 -
Gabi3544g00004 1013 Gene3D - 689 882 - -
Gabi3544g00004 1013 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 15 1011 IPR028309 GO:0006357|GO:0051726
Gabi3544g00004 1013 SMART RB_A_2 408 609 IPR002720 GO:0005634|GO:0051726
Gabi3544g00004 1013 CDD CYCLIN_AtRBR_like 731 862 - -
Gabi3544g00004 1013 FunFam Retinoblastoma-related protein 1 683 894 - -
Gabi3544g00004 1013 Pfam Retinoblastoma-associated protein B domain 731 858 IPR002719 GO:0005634|GO:0051726
Gabi3544g00004 1013 Pfam Domain of unknown function (DUF3452) 91 226 IPR024599 -
Gabi3544g00004 1013 Gene3D - 187 345 - -
Gabi3544g00004 1013 SMART DUF3452_2 80 226 IPR024599 -
Gabi3544g00004 1013 Pfam Retinoblastoma-associated protein A domain 408 609 IPR002720 GO:0005634|GO:0051726
Gabi3544g00004 1013 FunFam Retinoblastoma-related protein 1 411 599 - -
Gabi3544g00004 1013 Gene3D - 411 599 - -
Gabi3544g00004 1013 FunFam Retinoblastoma-related protein 1 187 345 - -
Gabi3544g00004 1013 SUPERFAMILY Cyclin-like 729 901 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3544g00004 Gabi-Chr3544 31685 41450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3544g00004 1 1013 Core Cell Cycle Gene Families AT3G12280 68.805 0.0 1395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Gabi3544g00004 RB_A 2.1e-63 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3544g00004 K04681 - gmx:100779266 1792.7