Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3543g00002 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCCGACCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCTATTATGGCTGAAAGGGATGCAGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAAGCAGCATTTGCAGAACGTGACATGGCATTCCTGCAACGAGATACTGCAATTGCGGAAAGAAATAATGCATTAATGGAGCGGGATAATGCAATTGCAACCCTTCAGTTTCGAGAAAACACCTTAACCAACGGTAGTATGTCATCATGCCCTCCAGGATGCCAAATCTCACGGGGAGTCAAGCACATGCATCATCCGCAGCAACAGGTACACCACTTACCTAACATGGGTGATGCTTCTTACAGCACAAGGGAAATGCACACAAGTGATGCCCTCCCAGCAGTTCCCATTACTTCAGAGGCTGGTAAGCCTCGACGGGCCAAACGACCGAAGGAAGGTAAGTCAGTGACACCTAATAAGAAGACTCCAAAAACTACAAGAAAGGTCAAGAGGGACAATGAAGATTTGAACAAGATGATGTTTGCCAATGGCAAGATGCATGAGTGGAAGAGTAGTCAGGAAATCATGAATGGAGGTGATAATCTTAACAAGCAGTTAGTAGTGTCAAAGGCTGATTGGAAATCTCAGGACTTAGCATTGAACCAAGTTGCATATGATGAGTCAACCATGTCAACACCAGGGTGCTCTTGTACTGGTGTTCTGAGGCAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGTTGCACAAACACCCTATCAGAGTATCCACTTCCAGCAGTGCCCAACAAGAGGCATGCTCGGGTAGGTGGTAGAAAAATGAGTGGAAGCGCTTTCAATAAGCTGCTTAGCCGGCTTGCAGCAGAAGGATATGATCTGTCAAACCCAGTTGACCTTAAAGACCATTGGGCTAAACACGGTACAAATCGATATATCACAATAAAGTAG 1020 0.4549 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAFAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENTLTNGSMSSCPPGCQISRGVKHMHHPQQQVHHLPNMGDASYSTREMHTSDALPAVPITSEAGKPRRAKRPKEGKSVTPNKKTPKTTRKVKRDNEDLNKMMFANGKMHEWKSSQEIMNGGDNLNKQLVVSKADWKSQDLALNQVAYDESTMSTPGCSCTGVLRQCYKWGNGGWQSACCTNTLSEYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGYDLSNPVDLKDHWAKHGTNRYITIK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3543g00002 339 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3543g00002 339 PANTHER - 1 339 IPR010409 -
Gabi3543g00002 339 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3543g00002 339 MobiDBLite consensus disorder prediction 132 190 - -
Gabi3543g00002 339 MobiDBLite consensus disorder prediction 158 174 - -
Gabi3543g00002 339 SMART GAGA_bind_2 1 339 IPR010409 -
Gabi3543g00002 339 Pfam GAGA binding protein-like family 1 339 IPR010409 -
Gabi3543g00002 339 Coils Coil 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3543g00002 Gabi-Chr3543 19962 23181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3543g00002 65 339 BBR or BPC Transcription factor family AT5G42520 63.448 1.48e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gabi3543g00002 GAGA_bind 2.4e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3543g00002 - - gmx:100783502 610.912