LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3539g00066	ATGACACACCCCTTCTGTTTCTTCTATGCTAAAATGATAAGATTCAAGTACTCCCAACCACTTCTTCTCTCAATTCTCCTCCTTTTCAACTCAGTATCCGCCATTGATTTCGTCTTCAATGGCTTCAACTCCTCTGATGTATTGCTCTTCAGCGATGCCACCATTGATTCTCGAGTTCTATCCCTCACCCATCACCAAACTTTCTCAATTGGTCGTGCTCTCTACCGTGAAAGGATCCCAACCAAGCACCCAAACTCTTCTTACGTATACCCTTTCTCCACTTCTTTCATCTTTTCCATGGCACCTTTTGAGGATACTCTTCCAGGTCATGGCTTAGTTTTCATCTTCACACCTGTTACGGGCATACAAGGTACAAGTTCTGCTCAAAATCTGGGTCTGTTTAACCTTACCAACAACGGAAATCCCAGCAACCACGTGTTTGGTGTTGAGTTCGATGTGTTCATGAACCAAGAGTTCGAAGACATGAACGCCAACCATGTTGGGATTGACTTAAACTCTCTCAAGTCTTTTGTCTCGCATGATGCTGGGTATTGGCCAGATGATAGGAAAAGCGAAGGTGACGAGTCTTTTCAGGAATCGATGCTTAACGATGGTGAAAATTACCAAGTTTGGATTGATTATGAAGATTCTTTTATTAATGTTACTATGGCACCGGTGGGTATGAAAAGGCCTAGCAGGCCGTTATTGAATGTTTCTCTCAACTTATCTGAAGTTTTTGTGGATGAAATGTTTGTTGGGTTTACTAGTGCCACAGGGCAATTAGTTCAAAGTCACAAGATTTTGGCTTGGAGTTTTAGCAATACTAATTTTTCGTTAAGTGAAGAACTCATTACTACTGGGTTACCATCTTTTGTTCTTCCAAAACGTTCAATTTTCCAGTCCAAGGGGTTTGTTGCTGGATTTACAGTGGGGATTTTCTTTATTATTTGTCTCTTGGTTATATTGGCGATGTTTTTGATTCAGAGGAAGCGAAGGAGAGCAAGGAAGAGAGAGGAAATGGAAGATTGGGAATTAGAGTATTGGCCACACAGAATGGCATATGAAGAAATAGAGGCATCAACAAAGGGGTTCTCTCAGGAAAATGTGATTGGAGTCGGTGGTAATGGGAAAGTCTACAAGGGTGTTTTACGTGGAGGGGCAGAGATTGCCGTGAAGCGCATTTCTCATGAAAATGATGGTATGCGAGAATTTCTTGCAGAAATTTCAAGTCTTGGAAGATTGAAGCAAAGGAATTTGGTGGGGTTGAGAGGCTGGTGCAAGAAAGATATGGGGAATTTCTTATTAGTTTATGATTATATGGAAAATGGGAGCTTAGACAAGAGGGTGTTTGATTGTGATGAGAGCAAGATGTTAAATTGTGAAGATAGAATAAAGATTATTAAGGATGTGGCTTTTGCAGTCTTGTACTTGCATGAGGGGTGGGAAGCCAAAGTAGTACATAGGGACATCAAGGCCAGCAATGTCTTACTAGATAAGGATATGAATGGAAGGCTCGGAGATTTTGGGTTAGCCAGAATGCAAAGCCATGGTCAAGTTTCTAGCACCACAAAATTGGTTGGAACAGTGGGGTACATGGCTCCTGAAGTGATTAGGACTGGAAGAGCTTCAACTCAGACAGATGTTTACATGTTTGGTATCTTGATTTTAGAGGTCATGTGTGGAAGGAGACCTCTAGAAGAAGGTAAACCACCTTTGGTTGAGTGGGTTTGGCAACTAATGGTTCACGGGCAACTTGTGCATGCACTTGATGAAAGGCTAAGGTCAAAAGGAGAGTTCAGTGTGCAAGAAGTGGAAAGGGTACTGAACTTGGGTTTGTTGTGTGCCTACCCTGAACCAAAAGCCAGGCCAACAATGAGACAAGTGGTGAATATTTTAGAGGGAAAGAACGAGGGTGAAGGGTCTGAAATTGAGAATTTGGATACTTATTTGCTCCAACAGTTGAAATCAAGGGATATATTGTCTGAGTATTCCCAATATTTTAGCTATGCATCACACCCAACTTTTGAAGATATTCGTCACCTGTCCTCAATGTCTCTCACTTGGTCCAAATCTATAGTTGAGGGTAGGTGA	2091	0.4175	MTHPFCFFYAKMIRFKYSQPLLLSILLLFNSVSAIDFVFNGFNSSDVLLFSDATIDSRVLSLTHHQTFSIGRALYRERIPTKHPNSSYVYPFSTSFIFSMAPFEDTLPGHGLVFIFTPVTGIQGTSSAQNLGLFNLTNNGNPSNHVFGVEFDVFMNQEFEDMNANHVGIDLNSLKSFVSHDAGYWPDDRKSEGDESFQESMLNDGENYQVWIDYEDSFINVTMAPVGMKRPSRPLLNVSLNLSEVFVDEMFVGFTSATGQLVQSHKILAWSFSNTNFSLSEELITTGLPSFVLPKRSIFQSKGFVAGFTVGIFFIICLLVILAMFLIQRKRRRARKREEMEDWELEYWPHRMAYEEIEASTKGFSQENVIGVGGNGKVYKGVLRGGAEIAVKRISHENDGMREFLAEISSLGRLKQRNLVGLRGWCKKDMGNFLLVYDYMENGSLDKRVFDCDESKMLNCEDRIKIIKDVAFAVLYLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFGLARMQSHGQVSSTTKLVGTVGYMAPEVIRTGRASTQTDVYMFGILILEVMCGRRPLEEGKPPLVEWVWQLMVHGQLVHALDERLRSKGEFSVQEVERVLNLGLLCAYPEPKARPTMRQVVNILEGKNEGEGSEIENLDTYLLQQLKSRDILSEYSQYFSYASHPTFEDIRHLSSMSLTWSKSIVEGR	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3539g00066	696	PANTHER	-	53	636	-	-
	Gabi3539g00066	696	ProSiteProfiles	Protein kinase domain profile.	364	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3539g00066	696	FunFam	L-type lectin-domain containing receptor kinase S.4	440	645	-	-
	Gabi3539g00066	696	Coils	Coil	326	346	-	-
	Gabi3539g00066	696	Pfam	Legume lectin domain	35	277	IPR001220	GO:0030246
	Gabi3539g00066	696	CDD	lectin_legume_LecRK_Arcelin_ConA	35	275	IPR001220	GO:0030246
	Gabi3539g00066	696	Gene3D	Phosphorylase Kinase; domain 1	325	439	-	-
	Gabi3539g00066	696	Pfam	Protein kinase domain	365	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3539g00066	696	FunFam	L-type lectin-domain containing receptor kinase S.4	33	280	-	-
	Gabi3539g00066	696	Gene3D	Transferase(Phosphotransferase) domain 1	440	653	-	-
	Gabi3539g00066	696	SMART	serkin_6	364	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3539g00066	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	485	497	IPR008271	GO:0004672\|GO:0006468
	Gabi3539g00066	696	Gene3D	-	33	283	-	-
	Gabi3539g00066	696	CDD	STKc_IRAK	370	634	-	-
	Gabi3539g00066	696	SUPERFAMILY	Protein kinase-like (PK-like)	340	633	IPR011009	-
	Gabi3539g00066	696	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	326	439	-	-
	Gabi3539g00066	696	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	279	IPR013320	-
	Gabi3539g00066	696	ProSitePatterns	Protein kinases ATP-binding region signature.	370	392	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3539g00066	Gabi-Chr3539	528374	530656	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3539g00066	30	580	Receptor kinase-like Gene Family	AT4G04960	67.684	0.0	735

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi3539g00066		Pkinase	2.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3539g00066	-		-	gmx:100804391	1169.84