Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00054 ATGGCATTTGAGCACTACTTTTCCCAGGAACTGAAAACCATCCCAAATGCTGTGACAGAAACAGAAAATTCCAATGGTTGTTTTGATTGCAACATTTGCTTAGACTCTGCGCATGAACCGGTAGTCACATTCTGTGGCCACCTTTACTGCTGGCCATGCATCTACAAGTGGCTGCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTTTGTAAAGCTGATATATCCCATACCGCAATGGTCCCACTGTATGGCCGGGGCCAGGCCCCCCCTGATGGGAAGATATCCTGTTGTGATATTTTTACACCACCAAGACCATCTGCTTCAAGTGTTCAAGCTCTGTTGGCAACATCATCTCAAAGGGGTCAGCAGCTTCCATATCGCAATCCTTATCAGGGTCAATATTTCAGCCCTCCTCTATACCAAGAAGGGGATGCCACCTCACAAATGCTCAATCTTGGTGCCACCATGACTCCAGGATCCCACCACCCTGTGGTTGGGATGTTTGGGGAAATGGTTTATGCCAGAGTGTTTGGAAACTCAGAAAATTTGTATGCCTACCCGAATTCTTATCGGCTGATGGGAAGGAATAGCCCTAGATTGAGAAGGCGAGAAATGCAGGCAGACAAATCATTGAACAGAATTTCAATTTTTCTCTTTTGCTGCTTTCTTCTTTGTCTAATCGTTTTCTGA 708 0.459 MAFEHYFSQELKTIPNAVTETENSNGCFDCNICLDSAHEPVVTFCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISHTAMVPLYGRGQAPPDGKISCCDIFTPPRPSASSVQALLATSSQRGQQLPYRNPYQGQYFSPPLYQEGDATSQMLNLGATMTPGSHHPVVGMFGEMVYARVFGNSENLYAYPNSYRLMGRNSPRLRRREMQADKSLNRISIFLFCCFLLCLIVF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00054 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 128 IPR013083 -
Gabi3539g00054 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi3539g00054 235 CDD RING-HC_AtRMA-like 28 78 - -
Gabi3539g00054 235 SUPERFAMILY RING/U-box 26 89 - -
Gabi3539g00054 235 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Gabi3539g00054 235 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 127 - -
Gabi3539g00054 235 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Gabi3539g00054 235 SMART ring_2 30 76 IPR001841 -
Gabi3539g00054 235 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00054 Gabi-Chr3539 417671 420152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00054 10 221 C3H Transcription Factor Family AT4G27470 41.704 5.93e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00054 K10666 - gmx:100816864 376.326