Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00032 ATGTACATAGCTTCTTCCATGGGAAGGTCTTTCAAGGACTCATTGAAACTGCTTGAAGCTGATATCCACCATGCCAATACCCTGGCGTCAGATTTTTCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTATTTTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCGCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCCTCTTTGTTACAACTTCAAAAAGGTGTCACCGATACAGAGGATAAAAAACAGAAGGCTGTATGCATGGAGAGGTATCGTAAAAGAGACGATGAGGAGCACAGACAATCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTAAAATGCTACCATGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTTAAGAGAGTTAACTCATGTGATCTATGGCTATTCACTGATGGTAGGGACATAGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCGTTCCAGACTCCCTTTTTGACACATATGACTCTCACCTAAGATGA 747 0.4217 MYIASSMGRSFKDSLKLLEADIHHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRKRDDEEHRQSSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRTRSQSCPFCRDSLKRVNSCDLWLFTDGRDIVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHLR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00032 248 PANTHER RING FINGER PROTEIN 41, 151 9 245 - -
Gabi3539g00032 248 SMART ring_2 152 189 IPR001841 -
Gabi3539g00032 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 200 IPR013083 -
Gabi3539g00032 248 ProSiteProfiles Zinc finger RING-type profile. 152 190 IPR001841 -
Gabi3539g00032 248 Pfam Zinc finger, C3HC4 type (RING finger) 149 195 - -
Gabi3539g00032 248 ProSitePatterns Zinc finger RING-type signature. 167 176 IPR017907 -
Gabi3539g00032 248 FunFam RING/U-box superfamily protein 130 199 - -
Gabi3539g00032 248 SUPERFAMILY RING/U-box 141 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00032 Gabi-Chr3539 306663 313620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00032 144 193 C3H Transcription Factor Family AT5G41350 42.593 3.06e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00032 K25840 - gmx:100789769 476.863