Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00031 ATGGCAAAATTGTCTTTCAAGGACTCATTGAAACTGCTTGAAGCTGATATCCACCATGCCAATACCCTGGCGTCAGATTTTTCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTATTTTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCGCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGGTGTCACCGATACAGAGGATAAAAAACAGAAGGCTGTATGCATGGAGAGGTATCGTAAAAGAGACGATGAGGAGCACAGACAATCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTAAAATGCTACCATGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTTAAGAGAGTTAACTCATGTGATCTATGGCTATTCACTGATGGTAGGGACATAGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCGTTCCAGACTCCCTTTTTGACACATATGACTCTCACCTAAGATGA 696 0.4224 MAKLSFKDSLKLLEADIHHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYGVTDTEDKKQKAVCMERYRKRDDEEHRQSSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRTRSQSCPFCRDSLKRVNSCDLWLFTDGRDIVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHLR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00031 231 Pfam Zinc finger, C3HC4 type (RING finger) 132 178 - -
Gabi3539g00031 231 PANTHER RING FINGER PROTEIN 41, 151 4 228 - -
Gabi3539g00031 231 SMART ring_2 135 172 IPR001841 -
Gabi3539g00031 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 192 IPR013083 -
Gabi3539g00031 231 SUPERFAMILY RING/U-box 124 177 - -
Gabi3539g00031 231 ProSiteProfiles Zinc finger RING-type profile. 135 173 IPR001841 -
Gabi3539g00031 231 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Gabi3539g00031 231 FunFam RING/U-box superfamily protein 103 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00031 Gabi-Chr3539 306072 313620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00031 71 176 C3H Transcription Factor Family AT5G41350 32.456 2.94e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00031 K25840 - gmx:100789769 435.261