Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00030 ATGGCAAAATTGTCTTTCAAGGACTCATTGAAACTGCTTGAAGCTGATATCCACCATGCCAATACCCTGGCGTCAGATTTTTCAAGGGAATATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCAGCACACCTGTTTCTATTTTTGGTGCAATGGACAGACTGCAATCTTGCTGGAGCGCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGATGGGACAACTACCATGTCTACCCATGAAAGAAAAGCAAGTATTAGGGAATTCTATGCGGTCATATATCCCTCTTTGTTACAACTTCAAAAAGGTGTCACCGATACAGAGGATAAAAAACAGAAGGCTGTATGCATGGAGAGGTATCGTAAAAGAGACGATGAGGAGCACAGACAATCTTCAGACATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTAAAATGCTACCATGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGTGACAGTCTTAAGAGAGTTAACTCATGTGATCTATGGCTATTCACTGATGGTAGGGACATAGTAGACATGGCAACAGTGACAAGGGAGAATCTCAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATCGTTCCAGACTCCCTTTTTGACACATATGACTCTCACCTAAGATGA 732 0.4194 MAKLSFKDSLKLLEADIHHANTLASDFSREYDGACLQMRMSYSPAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCMERYRKRDDEEHRQSSDIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYHEWRTRSQSCPFCRDSLKRVNSCDLWLFTDGRDIVDMATVTRENLRRLFMYIDKLPLIVPDSLFDTYDSHLR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00030 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Gabi3539g00030 243 SUPERFAMILY RING/U-box 136 190 - -
Gabi3539g00030 243 SMART ring_2 147 184 IPR001841 -
Gabi3539g00030 243 PANTHER RING FINGER PROTEIN 41, 151 4 240 - -
Gabi3539g00030 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 196 IPR013083 -
Gabi3539g00030 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Gabi3539g00030 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Gabi3539g00030 243 FunFam RING/U-box superfamily protein 125 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00030 Gabi-Chr3539 306072 313620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00030 147 202 C3H Transcription Factor Family AT5G01960 39.286 3.80e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00030 K25840 - gmx:100789769 466.077