Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00028 ATGTCTGACATCGAAAATCACGCTTCCCTTCGTGGTGGTTCATCGCCCGACGAGCCAGTTTCTCGTGGATCAGCTCATAAGAGTTTGAGGATGAGAGAGCGAGATGGAGAGAGGAAACCTTTTCATAACCGCCACCACAGAGACTATAGGGATGGGGGTTTTAAAGGAAGGGGCAAATATGACAGTTATAATCGTCACCGGAGCCGTGATTATGATAGGCATAATGACCATGTTCGCGATGGAGATACAAGGCACAAATATGGAGCATATTCAAAGAGATCCAGGGGAGAATCTAGATCACGATCCAGATCCCCTTCTCGTTCAGAATGCAAAAAGACCTCTGGTTTTGACCTTGCACCACCTGCTGCGGGCGTAACACCTGGTGTTTCAGTTAATAATGCAGGGCAAATGTTGGGTATTAACCAAATGATTCAAGGAACTGCACAAAATTTGCCACAATTTGGGATATCGCAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAACAGTCAATTGCAGCATTCTTCAGCCACGTCATGATTGCTATTGGGGGGAATTCTACTGGAACAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTAGCTGCAGCTCTAGGTCCCAGCCAGCCAAGTCCATACCTTAACTTGTCTGCTGTTGGACTTTCTGTGGGTGCAATTGGTGGAACTGAGGGACTTGACCGCATCTTTGTAGGTGGGCTGCCATACTACTTTACTGAAGAACAAATGAAAGAATTGCTCCAGGCTTTTGGTCCTCTCCGGGCTTTTGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAACATATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAGTAGCTCTGGAAGTGGGTGGGTTAAATATTTTAGGAATGGAAAGAGTGCCAACAACAAATGATGAAAGCCCCACTAAAGTCTTATGTTTGACTCAGGCCGTTACTACCGATCAATTGATGGATGACATGGAGTATAAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGTTGAATGTTGTTATTCCTCGTCCAAAACACAGTGAAGAGCTGCCTCCAGGTATTGGAAAGGTGTTCTTGGAGTACTCTGATACAGCTGGTTGTTCCGCCGCTAAAAATGCACTAAATGGTAGGAAATTCGGGGGCAATATTGTGACTGCCGTTTATTTTCCTGAAGAAAAATATCTGAGTATGGAGTATGATATATAA 1539 0.4412 MSDIENHASLRGGSSPDEPVSRGSAHKSLRMRERDGERKPFHNRHHRDYRDGGFKGRGKYDSYNRHRSRDYDRHNDHVRDGDTRHKYGAYSKRSRGESRSRSRSPSRSECKKTSGFDLAPPAAGVTPGVSVNNAGQMLGINQMIQGTAQNLPQFGISQATRHARRVYVGGLPPLTNEQSIAAFFSHVMIAIGGNSTGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPYLNLSAVGLSVGAIGGTEGLDRIFVGGLPYYFTEEQMKELLQAFGPLRAFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKVALEVGGLNILGMERVPTTNDESPTKVLCLTQAVTTDQLMDDMEYKEILEDMRDECCKFGTLLNVVIPRPKHSEELPPGIGKVFLEYSDTAGCSAAKNALNGRKFGGNIVTAVYFPEEKYLSMEYDI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00028 512 Gene3D - 159 259 IPR012677 -
Gabi3539g00028 512 Gene3D - 406 510 IPR012677 -
Gabi3539g00028 512 FunFam U2 snRNP auxiliary factor large subunit 159 260 - -
Gabi3539g00028 512 SUPERFAMILY RNA-binding domain, RBD 285 501 IPR035979 GO:0003676
Gabi3539g00028 512 CDD RRM2_U2AF65 284 360 - -
Gabi3539g00028 512 CDD RRM3_U2AF65 410 498 - -
Gabi3539g00028 512 FunFam U2 snRNP auxiliary factor large subunit 261 373 - -
Gabi3539g00028 512 PANTHER RNA-BINDING PROTEIN 22 510 - -
Gabi3539g00028 512 Gene3D - 279 380 IPR012677 -
Gabi3539g00028 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Gabi3539g00028 512 SUPERFAMILY RNA-binding domain, RBD 134 250 IPR035979 GO:0003676
Gabi3539g00028 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Gabi3539g00028 512 CDD RRM1_U2AF65 163 245 - -
Gabi3539g00028 512 MobiDBLite consensus disorder prediction 23 110 - -
Gabi3539g00028 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 247 IPR000504 GO:0003723
Gabi3539g00028 512 MobiDBLite consensus disorder prediction 1 124 - -
Gabi3539g00028 512 SMART rrm1_1 422 498 IPR000504 GO:0003723
Gabi3539g00028 512 SMART rrm1_1 165 243 IPR000504 GO:0003723
Gabi3539g00028 512 SMART rrm1_1 285 358 IPR000504 GO:0003723
Gabi3539g00028 512 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 510 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi3539g00028 512 FunFam U2 snRNP auxiliary factor large subunit 407 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00028 Gabi-Chr3539 282840 291877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00028 278 425 Eukaryotic Initiation Factors Gene Family AT1G71770 22.297 2.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00028 K12837 - qsa:O6P43_031823 677.937