Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00027 ATGTCTGACATCGAAAATCACGCTTCCCTTCGTGGTGGTTCATCGCCCGACGAGCCAGTTTCTCGTGGATCAGCTCATAAGAGTTTGAGGATGAGAGAGCGAGATGGAGAGAGGAAACCTTTTCATAACCGCCACCACAGAGACTATAGGGATGGGGGTTTTAAAGGAAGGGGCAAATATGACAGTTATAATCGTCACCGGAGCCGTGATTATGATAGGCATAATGACCATGTTCGCGATGGAGATACAAGGCACAAATATGGAGCATATTCAAAGAGATCCAGGGGAGAATCTAGATCACGATCCAGATCCCCTTCTCGTTCAGAATGCAAAAAGACCTCTGGTTTTGACCTTGCACCACCTGCTGCGGGCGTAACACCTGGTGTTTCAGGGCAAATGTTGGGTATTAACCAAATGATTCAAGGAACTGCACAAAATTTGCCACAATTTGGGATATCGCAGATTGGAGCTTTTTCCTTAATGCAAGTCCAACCTATGACACAGCAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAACAGTCAATTGCAGCATTCTTCAGCCACGTCATGATTGCTATTGGGGGGAATTCTACTGGAACAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTAGCTGCAGCTCTAGGTCCCAGCCAGCCAAGTCCATACCTTAACTTGTCTGCTGTTGGACTTTCTGTGGGTGCAATTGGTGGAACTGAGGGACTTGACCGCATCTTTGTAGGTGGGCTGCCATACTACTTTACTGAAGAACAAATGAAAGAATTGCTCCAGGCTTTTGGTCCTCTCCGGGCTTTTGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAACATATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAGTAGCTCTGGAAGTGGGTGGGTTAAATATTTTAGGAATGGAAAGAGTGCCAACAACAAATGATGAAAGCCCCACTAAAGTCTTATGTTTGACTCAGGCCGTTACTACCGATCAATTGATGGATGACATGGAGTATAAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGTTGAATGTTGTTATTCCTCGTCCAAAACACAGTGAAGAGCTGCCTCCAGGTATTGGAAAGGTGTTCTTGGAGTACTCTGATACAGCTGGTTGTTCCGCCGCTAAAAATGCACTAAATGGTAGGAAATTCGGGGGCAATATTGTGACTGCCGTTTATTTTCCTGAAGAAAAATATCTGAGTATGGAGTATGATATATAA 1572 0.4421 MSDIENHASLRGGSSPDEPVSRGSAHKSLRMRERDGERKPFHNRHHRDYRDGGFKGRGKYDSYNRHRSRDYDRHNDHVRDGDTRHKYGAYSKRSRGESRSRSRSPSRSECKKTSGFDLAPPAAGVTPGVSGQMLGINQMIQGTAQNLPQFGISQIGAFSLMQVQPMTQQATRHARRVYVGGLPPLTNEQSIAAFFSHVMIAIGGNSTGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPYLNLSAVGLSVGAIGGTEGLDRIFVGGLPYYFTEEQMKELLQAFGPLRAFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKVALEVGGLNILGMERVPTTNDESPTKVLCLTQAVTTDQLMDDMEYKEILEDMRDECCKFGTLLNVVIPRPKHSEELPPGIGKVFLEYSDTAGCSAAKNALNGRKFGGNIVTAVYFPEEKYLSMEYDI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00027 523 CDD RRM3_U2AF65 421 509 - -
Gabi3539g00027 523 CDD RRM1_U2AF65 174 256 - -
Gabi3539g00027 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Gabi3539g00027 523 FunFam U2 snRNP auxiliary factor large subunit 418 522 - -
Gabi3539g00027 523 PANTHER RNA-BINDING PROTEIN 22 521 - -
Gabi3539g00027 523 Gene3D - 290 391 IPR012677 -
Gabi3539g00027 523 FunFam U2 snRNP auxiliary factor large subunit 170 271 - -
Gabi3539g00027 523 FunFam U2 snRNP auxiliary factor large subunit 272 384 - -
Gabi3539g00027 523 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 521 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi3539g00027 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Gabi3539g00027 523 Gene3D - 417 521 IPR012677 -
Gabi3539g00027 523 SUPERFAMILY RNA-binding domain, RBD 296 512 IPR035979 GO:0003676
Gabi3539g00027 523 MobiDBLite consensus disorder prediction 23 110 - -
Gabi3539g00027 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 258 IPR000504 GO:0003723
Gabi3539g00027 523 SMART rrm1_1 433 509 IPR000504 GO:0003723
Gabi3539g00027 523 SMART rrm1_1 296 369 IPR000504 GO:0003723
Gabi3539g00027 523 SMART rrm1_1 176 254 IPR000504 GO:0003723
Gabi3539g00027 523 MobiDBLite consensus disorder prediction 1 124 - -
Gabi3539g00027 523 Gene3D - 170 270 IPR012677 -
Gabi3539g00027 523 SUPERFAMILY RNA-binding domain, RBD 58 255 IPR035979 GO:0003676
Gabi3539g00027 523 CDD RRM2_U2AF65 295 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00027 Gabi-Chr3539 282840 291877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00027 289 436 Eukaryotic Initiation Factors Gene Family AT1G71770 22.297 1.86e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00027 K12837 - qsa:O6P43_031823 711.064