Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00026 ATGTCTGACATCGAAAATCACGCTTCCCTTCGTGGTGGTTCATCGCCCGACGAGCCAGTTTCTCGTGGATCAGCTCATAAGAGTTTGAGGATGAGAGAGCGAGATGGAGAGAGGAAACCTTTTCATAACCGCCACCACAGAGACTATAGGGATGGGGGTTTTAAAGGAAGGGGCAAATATGACAGTTATAATCGTCACCGGAGCCGTGATTATGATAGGCATAATGACCATGTTCGCGATGGAGATACAAGGCACAAATATGGAGCATATTCAAAGAGATCCAGGGGAGAATCTAGATCACGATCCAGATCCCCTTCTCGTTCAGAATGCAAAAAGACCTCTGGTTTTGACCTTGCACCACCTGCTGCGGGCGTAACACCTGGTGTTTCAGGGCAAATGTTGGGTATTAACCAAATGATTCAAGGAACTGCACAAAATTTGCCACAATTTGGGATATCGCAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAACAGTCAATTGCAGCATTCTTCAGCCACGTCATGATTGCTATTGGGGGGAATTCTACTGGAACAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTAGCTGCAGCTCTAGGTCCCAGCCAGCCAAGTCCATACCTTAACTTGTCTGCTGTTGGACTTTCTGTGGGTGCAATTGGTGGAACTGAGGGACTTGACCGCATCTTTGTAGGTGGGCTGCCATACTACTTTACTGAAGAACAAATGAAAGAATTGCTCCAGGCTTTTGGTCCTCTCCGGGCTTTTGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAACATATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAGTAGCTCTGGAAGTGGGTGGGTTAAATATTTTAGGAATGGAAAGAGTGCCAACAACAAATGATGAAAGCCCCACTAAAGTCTTATGTTTGACTCAGGCCGTTACTACCGATCAATTGATGGATGACATGGAGTATAAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGTTGAATGTTGTTATTCCTCGTCCAAAACACAGTGAAGAGCTGCCTCCAGGTATTGGAAAGGTGTTCTTGGAGTACTCTGATACAGCTGGTTGTTCCGCCGCTAAAAATGCACTAAATGGTAGGAAATTCGGGGGCAATATTGTGACTGCCGTTTATTTTCCTGAAGAAAAATATCTGAGTATGGAGTATGATATATAA 1527 0.4427 MSDIENHASLRGGSSPDEPVSRGSAHKSLRMRERDGERKPFHNRHHRDYRDGGFKGRGKYDSYNRHRSRDYDRHNDHVRDGDTRHKYGAYSKRSRGESRSRSRSPSRSECKKTSGFDLAPPAAGVTPGVSGQMLGINQMIQGTAQNLPQFGISQATRHARRVYVGGLPPLTNEQSIAAFFSHVMIAIGGNSTGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPYLNLSAVGLSVGAIGGTEGLDRIFVGGLPYYFTEEQMKELLQAFGPLRAFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKVALEVGGLNILGMERVPTTNDESPTKVLCLTQAVTTDQLMDDMEYKEILEDMRDECCKFGTLLNVVIPRPKHSEELPPGIGKVFLEYSDTAGCSAAKNALNGRKFGGNIVTAVYFPEEKYLSMEYDI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00026 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 243 IPR000504 GO:0003723
Gabi3539g00026 508 CDD RRM2_U2AF65 280 356 - -
Gabi3539g00026 508 CDD RRM3_U2AF65 406 494 - -
Gabi3539g00026 508 Gene3D - 402 506 IPR012677 -
Gabi3539g00026 508 FunFam U2 snRNP auxiliary factor large subunit 403 507 - -
Gabi3539g00026 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Gabi3539g00026 508 SUPERFAMILY RNA-binding domain, RBD 130 246 IPR035979 GO:0003676
Gabi3539g00026 508 PANTHER RNA-BINDING PROTEIN 22 506 - -
Gabi3539g00026 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 351 IPR000504 GO:0003723
Gabi3539g00026 508 SUPERFAMILY RNA-binding domain, RBD 281 497 IPR035979 GO:0003676
Gabi3539g00026 508 Gene3D - 155 255 IPR012677 -
Gabi3539g00026 508 Gene3D - 275 376 IPR012677 -
Gabi3539g00026 508 MobiDBLite consensus disorder prediction 23 110 - -
Gabi3539g00026 508 FunFam U2 snRNP auxiliary factor large subunit 257 369 - -
Gabi3539g00026 508 CDD RRM1_U2AF65 159 241 - -
Gabi3539g00026 508 MobiDBLite consensus disorder prediction 1 124 - -
Gabi3539g00026 508 FunFam U2 snRNP auxiliary factor large subunit 155 256 - -
Gabi3539g00026 508 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 506 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi3539g00026 508 SMART rrm1_1 281 354 IPR000504 GO:0003723
Gabi3539g00026 508 SMART rrm1_1 161 239 IPR000504 GO:0003723
Gabi3539g00026 508 SMART rrm1_1 418 494 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00026 Gabi-Chr3539 282840 291877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00026 274 421 Eukaryotic Initiation Factors Gene Family AT1G71770 22.297 2.18e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00026 K12837 - qsa:O6P43_031823 678.322