Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00025 ATGTCTGACATCGAAAATCACGCTTCCCTTCGTGGTGGTTCATCGCCCGACGAGCCAGTTTCTCGTGGATCAGCTCATAAGAGTTTGAGGATGAGAGAGCGAGATGGAGAGAGGAAACCTTTTCATAACCGCCACCACAGAGACTATAGGGATGGGGGTTTTAAAGGAAGGGGCAAATATGACAGTTATAATCGTCACCGGAGCCGTGATTATGATAGGCATAATGACCATGTTCGCGATGGAGATACAAGGCACAAATATGGAGCATATTCAAAGAGATCCAGGGGAGAATCTAGATCACGATCCAGATCCCCTTCTCGTTCAGAATGCAAAAAGACCTCTGGTTTTGACCTTGCACCACCTGCTGCGGGCGTAACACCTGGTGTTTCAGTTAATAATGCAGGGCAAATGTTGGGTATTAACCAAATGATTCAAGGAACTGCACAAAATTTGCCACAATTTGGGATATCGCAGATTGGAGCTTTTTCCTTAATGCAAGTCCAACCTATGACACAGCAGGCTACAAGGCACGCACGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTGACTAATGAACAGTCAATTGCAGCATTCTTCAGCCACGTCATGATTGCTATTGGGGGGAATTCTACTGGAACAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCATTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTAGCTGCAGCTCTAGGTCCCAGCCAGCCAAGTCCATACCTTAACTTGTCTGCTGTTGGACTTTCTGTGGGTGCAATTGGTGGAACTGAGGGACTTGACCGCATCTTTGTAGGTGGGCTGCCATACTACTTTACTGAAGAACAAATGAAAGAATTGCTCCAGGCTTTTGGTCCTCTCCGGGCTTTTGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAAACAGAACAGGAACATATCTTTGCACGGGCACAACAGCATATAGCTATGCAGAAAGTAGCTCTGGAAGTGGGTGGGTTAAATATTTTAGGAATGGAAAGAGTGCCAACAACAAATGATGAAAGCCCCACTAAAGTCTTATGTTTGACTCAGGCCGTTACTACCGATCAATTGATGGATGACATGGAGTATAAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGTTGAATGTTGTTATTCCTCGTCCAAAACACAGTGAAGAGCTGCCTCCAGGTATTGGAAAGGTGTTCTTGGAGTACTCTGATACAGCTGGTTGTTCCGCCGCTAAAAATGCACTAAATGGTAGGAAATTCGGGGGCAATATTGTGACTGCCGTTTATTTTCCTGAAGAAAAATATCTGAGTATGGAGTATGATATATAA 1584 0.4407 MSDIENHASLRGGSSPDEPVSRGSAHKSLRMRERDGERKPFHNRHHRDYRDGGFKGRGKYDSYNRHRSRDYDRHNDHVRDGDTRHKYGAYSKRSRGESRSRSRSPSRSECKKTSGFDLAPPAAGVTPGVSVNNAGQMLGINQMIQGTAQNLPQFGISQIGAFSLMQVQPMTQQATRHARRVYVGGLPPLTNEQSIAAFFSHVMIAIGGNSTGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPSQPSPYLNLSAVGLSVGAIGGTEGLDRIFVGGLPYYFTEEQMKELLQAFGPLRAFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAMQKVALEVGGLNILGMERVPTTNDESPTKVLCLTQAVTTDQLMDDMEYKEILEDMRDECCKFGTLLNVVIPRPKHSEELPPGIGKVFLEYSDTAGCSAAKNALNGRKFGGNIVTAVYFPEEKYLSMEYDI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00025 527 CDD RRM1_U2AF65 178 260 - -
Gabi3539g00025 527 Gene3D - 294 395 IPR012677 -
Gabi3539g00025 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 262 IPR000504 GO:0003723
Gabi3539g00025 527 CDD RRM3_U2AF65 425 513 - -
Gabi3539g00025 527 Gene3D - 421 525 IPR012677 -
Gabi3539g00025 527 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 525 IPR006529 GO:0003723|GO:0005634|GO:0006397
Gabi3539g00025 527 SUPERFAMILY RNA-binding domain, RBD 58 259 IPR035979 GO:0003676
Gabi3539g00025 527 FunFam U2 snRNP auxiliary factor large subunit 422 526 - -
Gabi3539g00025 527 Gene3D - 174 274 IPR012677 -
Gabi3539g00025 527 FunFam U2 snRNP auxiliary factor large subunit 276 388 - -
Gabi3539g00025 527 MobiDBLite consensus disorder prediction 23 110 - -
Gabi3539g00025 527 FunFam U2 snRNP auxiliary factor large subunit 174 275 - -
Gabi3539g00025 527 SUPERFAMILY RNA-binding domain, RBD 300 516 IPR035979 GO:0003676
Gabi3539g00025 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Gabi3539g00025 527 PANTHER RNA-BINDING PROTEIN 22 525 - -
Gabi3539g00025 527 SMART rrm1_1 300 373 IPR000504 GO:0003723
Gabi3539g00025 527 SMART rrm1_1 437 513 IPR000504 GO:0003723
Gabi3539g00025 527 SMART rrm1_1 180 258 IPR000504 GO:0003723
Gabi3539g00025 527 MobiDBLite consensus disorder prediction 1 124 - -
Gabi3539g00025 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Gabi3539g00025 527 CDD RRM2_U2AF65 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00025 Gabi-Chr3539 282840 291878 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00025 293 440 Eukaryotic Initiation Factors Gene Family AT1G71770 22.297 1.94e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00025 K12837 - qsa:O6P43_031823 710.679