Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00022 ATGAGTTGTGGCTGCTTTGGAGCCTCCACTATAAAGAAGAAAAGAAGTCTTTCTTATATTCCCAAAGAAATTGATGGCTATCCGCTAGGTAATATTAGGCATTTCTCTGATAAAGAACTGAGATTGGCAACCGATAATTATCATTTAAGACATAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTAAAAGATGGAAGGCAGGTAGCAGTGAAGACCCTTTCAGTTGGGTCAAAGCAAGGATTTCGTGAATTTTTGGCTGAAATCAACACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGCCGTACATTAGTCTACGAGTATGTGGAAAATGGAAGCGTTGATAGTGCATTACTTGGCAAAAAGAATAAAAACATCAAACTAGACTGGAGAAAAAGATCTACTATTTGTGTGGGAACTGCTAAGGCTCTTGCATTTCTTCATGAAGAACTTGCACCACATATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGACTTTAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCAGTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCGGAATATGCATTTGGTGGCCAGTTAACCATGAAGGCTGATGTATATAGCTTTGGGGTTCTTATACTTGAAATTATTAGTGCCAAAAGAAGCACGAGGACAAACATGGGAATGCCAGACCAATTCCTATTAGAATGGGCCTGGCAACTTTATGAAGAGGAGAAATTGTTGGAGCTTGTGGATTCAGACATGGAAAATTTTCATGTGAAAGAGGTGATTAGGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAACAGCAAGCAGAAGGCCATTGATGACTCAGGTAGTTGATATGCTCACCAAGGAAATTCAGCTCAACGAGAAACAACTTACAGCACCAGGATTTTTCACTGATGCAGGAGAATCCCAGAATAGCTCTACTAAAGTTAGTATTACTCAGGTGACACCACGGTGA 1068 0.397 MSCGCFGASTIKKKRSLSYIPKEIDGYPLGNIRHFSDKELRLATDNYHLRHKIGRGGFGTVYQGTLKDGRQVAVKTLSVGSKQGFREFLAEINTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSVDSALLGKKNKNIKLDWRKRSTICVGTAKALAFLHEELAPHIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDISHISTRIAGTTGYLAPEYAFGGQLTMKADVYSFGVLILEIISAKRSTRTNMGMPDQFLLEWAWQLYEEEKLLELVDSDMENFHVKEVIRYMKVALFCTQSTASRRPLMTQVVDMLTKEIQLNEKQLTAPGFFTDAGESQNSSTKVSITQVTPR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00022 355 CDD STKc_IRAK 53 319 - -
Gabi3539g00022 355 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
Gabi3539g00022 355 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gabi3539g00022 355 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 345 - -
Gabi3539g00022 355 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3539g00022 355 SUPERFAMILY Protein kinase-like (PK-like) 31 335 IPR011009 -
Gabi3539g00022 355 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3539g00022 355 PIRSF TyrPK_CSF1-R 128 352 - -
Gabi3539g00022 355 PIRSF TyrPK_CSF1-R 37 144 - -
Gabi3539g00022 355 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Gabi3539g00022 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gabi3539g00022 355 Pfam Protein tyrosine and serine/threonine kinase 48 317 IPR001245 GO:0004672|GO:0006468
Gabi3539g00022 355 MobiDBLite consensus disorder prediction 335 355 - -
Gabi3539g00022 355 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Gabi3539g00022 355 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 28 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00022 Gabi-Chr3539 240778 245602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00022 35 351 Receptor kinase-like Gene Family AT1G56120 49.211 4.37e-106 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3539g00022 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00022 - - gmx:100809588 566.229