Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00013 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGTAGAGGGCTTGATTGGAACCAGACCTTGTTGCAAGCACAAGACTTGGAGCTCCCAAAGCCTCCTCCTATGAGGAGACAACAGCAACAAACTCAGCAATCAGAGCATTTGAAGTGCCCGAGATGTGATTCTACTAATACCAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGTAGAGATTGTAAGAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGGAAGAATAAGCGAGTCAGAAAAACAACCACTCCAACCTCTGCCACCACCATAGCCACCACTTCAATTAGTACCACCACCTCAAATGGCAATATAGATGCTGAGTTGAGTTCCCACATGACAATTCAAACGCCACTTCAAAGGCAGAGTCTTTCTCCTCTTGCAATGGCTGATCAGAAAAGCATACCTTCCTCTCTCTATCAATCTCTGATTCGTCCACCATCTTTGCTGCCCCAGCAGAATCTGATGAGTACCAGAGACTCAGAAGTGTCAGCCTCTTTGCGATGCTCCAATGTCTACAACTATGGTGAAGAGTTTAAAATAATGGAGGAGCCAACCATCAACGGTATAATTCCCAGTACTAGCGGCAATAACACACACCCATGGGAGATACCTGCAACAAGTACTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGATATAGATTCGTTGGTCTCAACTGATCTGAATGTTCCTTGGGATGATTCTGATATCAAACCCTGA 789 0.4474 MGLSSKQVSSRGLDWNQTLLQAQDLELPKPPPMRRQQQQTQQSEHLKCPRCDSTNTKFCYYNNYNKSQPRHFCRDCKRHWTKGGTLRNVPVGGGRKNKRVRKTTTPTSATTIATTSISTTTSNGNIDAELSSHMTIQTPLQRQSLSPLAMADQKSIPSSLYQSLIRPPSLLPQQNLMSTRDSEVSASLRCSNVYNYGEEFKIMEEPTINGIIPSTSGNNTHPWEIPATSTGMEMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00013 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 179 IPR045174 GO:0003700|GO:0006355
Gabi3539g00013 262 MobiDBLite consensus disorder prediction 87 107 - -
Gabi3539g00013 262 MobiDBLite consensus disorder prediction 33 47 - -
Gabi3539g00013 262 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Gabi3539g00013 262 MobiDBLite consensus disorder prediction 26 47 - -
Gabi3539g00013 262 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Gabi3539g00013 262 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00013 Gabi-Chr3539 179781 182249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00013 34 108 C2C2-Dof Transcription Factor Family AT1G51700 61.333 1.24e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi3539g00013 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00013 - - gmx:778119 340.117