Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00006 ATGTACAGCATGGATTCATCTTCAGGCTCTCACTCTCAGCAACCACAGCTTCCTCCAGGGTTTCGGTTCCACCCCACAGATGAAGAACTACTCGTTCATTACCTCAAGAGAAAAACAGATTCTGCTCCTCTTCCTGTTGCAATCATCGCAGAGGTTGATCTCTACAAGTTCGATCCCTGGGAGCTCCCAAGTAAAGCAACGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCAAACAGGGCAGCAACTTCTGGGTATTGGAAAGCAACTGGAACTGACAAGCCTATATTGGCATCTGATGGACACCACAAAGTTGGAGTCAAGAAAGCCCTTGTCTTTTATGGTGGGAAGCCTCCCAAAGGTGTTAAAACCGATTGGATCATGCACGAGTATAGGCTTCTTGACAAGTCCTTCAATTCTATCTCAAAGCCTCCTGATCCTCCAAATACTACCAATAAGAAGAACAACTCTCTCAGGCTTGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAATACTAGCCTGCCAAGGCTACCTTTGATGGAACAGGATAAGGAGCTTTCTACAGAGAGTATGCTACCAACGATGTCAACTTTGTCAATGGCTAATACGTATCAGAATTCCCAACCCGCATCTTCGAGAAGCGCGAGTTATGGACCGCTGGGACTCGAAAATGACGACAACTTCTTCGATGGAATCTTAGCATCTGATCAGAGCATGCAAAATGGTTCTGATTCTCACCAACTCTCTTCGAACTCTAAGGGAAACGCTAACTTCCCTATGATACGAGCACTGCCTTCACAGTTTTGGAATGACAGTACTGGATCTTCTTCATCTGCCAGGAGATTCCATTGTGACCTTAATAGTGGAAGCGCTACCGCTGAGGAAAACAATTCCTTTGTTTCTCTGCTTAGCCAGCTTCCGCAGAACACGAGTTTACAACCAAATGGGCATCTTGGCCCTGTTGCTGATGGTGTATTGAGGCAACAGTTTCAACTTCCAAACATAAATTGGAACGCTTAG 1062 0.4557 MYSMDSSSGSHSQQPQLPPGFRFHPTDEELLVHYLKRKTDSAPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASDGHHKVGVKKALVFYGGKPPKGVKTDWIMHEYRLLDKSFNSISKPPDPPNTTNKKNNSLRLDDWVLCRIYKKSNNTSLPRLPLMEQDKELSTESMLPTMSTLSMANTYQNSQPASSRSASYGPLGLENDDNFFDGILASDQSMQNGSDSHQLSSNSKGNANFPMIRALPSQFWNDSTGSSSSARRFHCDLNSGSATAEENNSFVSLLSQLPQNTSLQPNGHLGPVADGVLRQQFQLPNINWNA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00006 353 ProSiteProfiles NAC domain profile. 17 182 IPR003441 GO:0003677|GO:0006355
Gabi3539g00006 353 SUPERFAMILY NAC domain 9 182 IPR036093 GO:0003677|GO:0006355
Gabi3539g00006 353 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3539g00006 353 PANTHER NAC TRANSCRIPTION FACTOR 56 17 235 - -
Gabi3539g00006 353 FunFam NAC transcription factor 56 26 187 - -
Gabi3539g00006 353 MobiDBLite consensus disorder prediction 249 270 - -
Gabi3539g00006 353 Gene3D NAC domain 26 187 IPR036093 GO:0003677|GO:0006355
Gabi3539g00006 353 MobiDBLite consensus disorder prediction 1 19 - -
Gabi3539g00006 353 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00006 Gabi-Chr3539 96666 98678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00006 5 353 NAC Transcription Factor Family AT1G61110 53.782 1.48e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi3539g00006 NAM 3.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00006 - - gmx:100797132 514.998