Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00003 ATGGATAATATTATATTGAAGCATACAATATTCCACATTTTGGCTTTTATACTGTTTCTATCATTGAAGCCTGCTATTTCTTCTAGAGATAGCCAATGGGGTTTTGGGAGGAAATTGGGCTCTGTGAATAATGGTGATCTTGTGACCAATTTGCCTGGCCAGCCTCCTGTAGATTTCCAGCACTACGCTGGATATGTTACAGTCAATGGAACCAATGGAAGAGCACTCTTTTATTGGTTCTATGAGGCCATGACTAAGCCTGAAGACAAACCATTGGTGCTGTGGCTTAATGGAGGTCCTGGATGCTCTTCTGTGGGATATGGAGCGACACAGGAAATTGGCCCATTTTTAGTGGACACCAATGGCAAGGGCCTTAAATTAAATAATTTCTCTTGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGAATATGCACAACTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTGCACAATTGGTTCCTCAAATTTCCATCATATCGAACTAGGACATTTTACATAGCAGGGGAAAGCTATGCAGGAAAGTATGTACCGGAGCTGGCTGAACTCATCCACGATAGGAACAAGGACCCTTCCCTTCATATTAATCTCAAGGGCATTTTGCTGGGAAATCCTCAAACATCTGATGCTGAGGATTGGTTAGGTTTGGTTGATTATGCTTGGAGTCATGCAGTGATATCTGATGAGACTCACAAAACAATCAGAAGAAGTTGTGACTTTAACAGCAATGATCCATGGAGTAATAAAGATTGTAATGAAGGAGTGGCCGAAGTAATGAAACAGTACAACGAAATTGATATCTACAGCCTCTACACTTCTGTCTGCTTTGCCAGTACAGCGCGTGCAAACGATCAATCTATGCAAACGCCAAAGCGTTTATCTAAAATGATGCCTAGGATCATGGGTGGTTATGATCCATGTCTAGATGACTATGCTAAAGTTTTTTATAATAGACCGGATGTTCAGAAGGCCCTCCATGTCAGTGATGGTCACAATCTGAAGAATTGGAGTATTTGCAACAACGACATATTTGAGGGCTGGGCACAATCAAAGCCTTCTGTTATCCCAATTTACAGGAAGCTTATTTCAGCAGGACTTAGGATTTGGGTTTACAGTGGAGACACTGATGGTAGGGTGCCAGTGCTGTCCACAAGATACAGCTTAAAAATTCTAGATTTGCCTATCACTAAGCGATGGAGGCCTTGGTACCATAAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGCCTTACATTTGCGACATTTCGAGGAGCTGGCCATGCAGTGCCTAGTTTTAAACCAAGCAACTCACTGGAATTCTTCTCCTCCTTCCTTCTTGGAGAATCCCCACCGTCTACGAAATAA 1440 0.4222 MDNIILKHTIFHILAFILFLSLKPAISSRDSQWGFGRKLGSVNNGDLVTNLPGQPPVDFQHYAGYVTVNGTNGRALFYWFYEAMTKPEDKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTNGKGLKLNNFSWNKEANMLFLESPVGVGFSYSNTTSEYAQLGDDFTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSLHINLKGILLGNPQTSDAEDWLGLVDYAWSHAVISDETHKTIRRSCDFNSNDPWSNKDCNEGVAEVMKQYNEIDIYSLYTSVCFASTARANDQSMQTPKRLSKMMPRIMGGYDPCLDDYAKVFYNRPDVQKALHVSDGHNLKNWSICNNDIFEGWAQSKPSVIPIYRKLISAGLRIWVYSGDTDGRVPVLSTRYSLKILDLPITKRWRPWYHKKEVSGWYQEYEGLTFATFRGAGHAVPSFKPSNSLEFFSSFLLGESPPSTK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00003 479 FunFam Carboxypeptidase 378 472 - -
Gabi3539g00003 479 SUPERFAMILY alpha/beta-Hydrolases 45 473 IPR029058 -
Gabi3539g00003 479 FunFam Carboxypeptidase 42 301 - -
Gabi3539g00003 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 442 455 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 Gene3D - 378 472 - -
Gabi3539g00003 479 Gene3D alpha/beta hydrolase 43 301 IPR029058 -
Gabi3539g00003 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 48 459 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 Gene3D - 331 367 - -
Gabi3539g00003 479 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Gabi3539g00003 479 Pfam Serine carboxypeptidase 52 471 IPR001563 GO:0004185|GO:0006508
Gabi3539g00003 479 FunFam Carboxypeptidase 328 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00003 Gabi-Chr3539 46572 51033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00003 336 473 Calmodulin-binding Proteins AT2G22960 32.374 7.91e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00003 K16297 - gmx:100805845 865.529