Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00002 ATGAGGATCGCGATCCTTCCGAGACCTGCGGATTCTTCATTGCAAAACGTTTCACCTGGTGAATCTGGTATCCATGATAATTTTCTGCTTCAAAATGGAAATTACGTGCTTGACTATGAACATGAAAACCAAGGACCTTCATCACAGACTTGGTCTTCTCCAAATGCTTTTCCTGTTGGTTACAGGGGTTCGTTCTCTGTGGTTGAAAGTGATGAGATTTGCTACACAGAAAGGAGGGGAGTTTCTAAATGTGAGATACCTGCTTACAGTGTGGACACAAGTTTCCCTGAAGCAAATTCAAACAACATAGCCGTTTGTGGAGATAATTTGAATCTGAGTCTGTGGAAGGGTGAAAATGATAGCGAAATCAAGCATGTGGGAGATGATGTAGAATCTGAGCATGCTTCACACAGCTCTATAGTTGAGAATGTTGATGTAAATTTTGAAGACTATGGAACTTTTTTTAAAGACATTGTTGGAGTTTCTGGGCAACAGGAGAATGACTCGTGTACATCTTTTCAAATGTCATTTGTGGATACTGATATACCTTTGCACGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCTAGTGATTTTAGTGAATACAATCCATCGTTGGACTGTTACCAGGGTACAGATGATAGATCTGTTGTTGTTGACACCTCTGGTTGTTTGCCTAACGGTGTTTATCCTCAAATATTTAAAAATGAAGAAATGACGAGGAACATGAAGCTGGCAAAAATGGAGTTCTTTGCTAATACAGCACATGTGAGTAGTGGCATGCATTCCAGCATTACTGGTGGGATTTCTTTTCAAGATGGTCAATTCATGTTAGAAGATAGTAAATATCCTTCTTTTTTTCCTGGTAATGTTCTCTTAGAAGACAAATCATCAGTGGAACTGTCAACTTGCGCTTCATATATTTCAAGTGAAGGCCAATCATTACATCTCAAAGCTGAAAGAGGTGAACTGATTATGCCTTACCAAAATTCTTTTCACAGTGATGATGCTGAGCTCAATGCAGGTCAAGATGTGAAACAATTACCTGGTATTTTCCGTTCTGTTGGATGTCAGAGTTATGATTTTTTCAAGCGTGAGGATAGTGATACAGTTATAGCGACTGAGAAATCCAATTATTATCAAGATATTATGGATGGAACTGCTGATAAATTTCTAGGAAACATGGCAAATTCAAATTTAAAATCCGTAGACAAATCTTTATCCGATGCCCAGGCGTCAATTGCTTGTGAGAAGCAGTTTAATTGTGTTACGAGTGAAGGAGAGGGCAAATCAATTCAACATAGTATTGATTCACAACTTTCAAAAGGAAGTAGTGAGAGATCCAATGTTGAGGATGACTCTGATGTTTGTATTATCGAAGACATCAGTCATCCTGCACTAATGCGTCGGTCTGCAGAACTTGGGAATTCCCTTAATATGTCACAGACTTCTAGATGTGGTTATACGCGGCCTTATATGGGGGGAGGCACAAGGCCAAAGGCACGTGATGAGCAATACATATTACGAGCTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCTGATGGACTTCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCGAGTTTATACTGCTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTCAGTTGCTTAATACATGCAACAATATTCAAAAAAGTGAATTAGAAACTTTGAATTTGGATGCGGATGATGACCTGCTTCCTGAGAATGGTGGAGTGAAGAAAGAATCTAGTATGTGCCAGGACTTGTCTAGTAAAAATCCAATCAAGAGCTTGAATTTGTTGGTGCATGCAAAGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGATGAGTTGCATAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATGCAATTGTCGGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGTGAAAAAGGAATTTATGAAGATCATACTGTACCAAGTAGGAAAAGGAAATGCCCTTCCAGTTCTAGTAGAAGTAGAAAGAAGGGAAATGACAACGTAGTGCTTGAGGCCGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTACTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGAGCCTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCCTGTCGGGGACTCCGATCCAAAATGCAATTGATGATCTCTACAGCTACTTTAGATTTCTAAGATATGACCCTTATGCTGTGTACACATCATTTTGTTCTACAATTAAGACTCCAATCAACAGAAATCCATCAAAAGGTTATAGAAAGCTACAAGCTGTCTTAAAAACGATAATGTTACGTCGGACTAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCACCTAAATTTGTAGAGTTGAAAAAAGTGGATTTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACGGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATTCTAAAACTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATCGCTTTTAAAATTTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCACGTTTTCTGTAATCAGTGCATTTGCGAACATCGTACTGGTGATGACAATCAGTGCCCTGTATCAAATTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGCCACGCTGAACAGTTCTCTTTCGGACGATGCTTGTGATAATTTGCCTGGTTACTCTAGTTCTGAAGTGGTGGAATCTGAGCCATGTTCTCAGGCTCAGCCATCTGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCTCTCACTGTCTAAACCACAATGCCATATTTCCAAAAAAAATTCTGTGCAGAGCTTTTTGGGGGGAAGTACTGAATGCCATGGGAGCTCCTGTAATGCTGACAATGGGAAATCCTTTGATGATTGTCCTGAGAATCAAAGTGTGTTTGTGGAGAGAAGCTCTAATGATGCAGTTGGTGCTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACCAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCAGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACGCCCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCGCATCGAATTGGGCAGACACGTCCTGTTACAGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTTCATCTGCATTTGGCGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTAGATGATTTAAAATACTTGTTTATGATGTGA 3879 0.4091 MRIAILPRPADSSLQNVSPGESGIHDNFLLQNGNYVLDYEHENQGPSSQTWSSPNAFPVGYRGSFSVVESDEICYTERRGVSKCEIPAYSVDTSFPEANSNNIAVCGDNLNLSLWKGENDSEIKHVGDDVESEHASHSSIVENVDVNFEDYGTFFKDIVGVSGQQENDSCTSFQMSFVDTDIPLHVATSTDSSICQGSNVPSDFSEYNPSLDCYQGTDDRSVVVDTSGCLPNGVYPQIFKNEEMTRNMKLAKMEFFANTAHVSSGMHSSITGGISFQDGQFMLEDSKYPSFFPGNVLLEDKSSVELSTCASYISSEGQSLHLKAERGELIMPYQNSFHSDDAELNAGQDVKQLPGIFRSVGCQSYDFFKREDSDTVIATEKSNYYQDIMDGTADKFLGNMANSNLKSVDKSLSDAQASIACEKQFNCVTSEGEGKSIQHSIDSQLSKGSSERSNVEDDSDVCIIEDISHPALMRRSAELGNSLNMSQTSRCGYTRPYMGGGTRPKARDEQYILRAALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPQLLNTCNNIQKSELETLNLDADDDLLPENGGVKKESSMCQDLSSKNPIKSLNLLVHAKGRPSAGTLIVCPTSVLRQWADELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYAIVGMEVPKQPLVDKDDGEKGIYEDHTVPSRKRKCPSSSSRSRKKGNDNVVLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKTPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSKTLWKSSVEMAKKLPQEKRLSLLKFLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHRTGDDNQCPVSNCKTRLSMSSVFSKATLNSSLSDDACDNLPGYSSSEVVESEPCSQAQPSDSSKIKAALEVLLSLSKPQCHISKKNSVQSFLGGSTECHGSSCNADNGKSFDDCPENQSVFVERSSNDAVGAVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVIARDKAVKDFNTRPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVSSAFGEDGTGGRQSRLTVDDLKYLFMM 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00002 1292 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 635 719 - -
Gabi3539g00002 1292 SUPERFAMILY RING/U-box 973 1026 - -
Gabi3539g00002 1292 CDD DEXDc_SHPRH-like 538 860 - -
Gabi3539g00002 1292 Gene3D - 508 600 IPR038718 -
Gabi3539g00002 1292 MobiDBLite consensus disorder prediction 436 457 - -
Gabi3539g00002 1292 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1128 1287 IPR001650 -
Gabi3539g00002 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 860 IPR027417 -
Gabi3539g00002 1292 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 402 1291 - -
Gabi3539g00002 1292 ProSitePatterns Zinc finger RING-type signature. 991 1000 IPR017907 -
Gabi3539g00002 1292 Pfam Helicase conserved C-terminal domain 1136 1234 IPR001650 -
Gabi3539g00002 1292 MobiDBLite consensus disorder prediction 716 735 - -
Gabi3539g00002 1292 Gene3D - 875 1291 IPR027417 -
Gabi3539g00002 1292 MobiDBLite consensus disorder prediction 716 749 - -
Gabi3539g00002 1292 Gene3D - 630 719 IPR038718 -
Gabi3539g00002 1292 Gene3D - 734 872 IPR038718 -
Gabi3539g00002 1292 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 553 822 IPR014001 -
Gabi3539g00002 1292 CDD SF2_C_SNF 1137 1244 - -
Gabi3539g00002 1292 SMART ultradead3 534 837 IPR014001 -
Gabi3539g00002 1292 MobiDBLite consensus disorder prediction 436 450 - -
Gabi3539g00002 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1291 IPR027417 -
Gabi3539g00002 1292 Pfam SNF2-related domain 558 937 IPR000330 GO:0005524|GO:0140658
Gabi3539g00002 1292 ProSiteProfiles Zinc finger RING-type profile. 976 1015 IPR001841 -
Gabi3539g00002 1292 SMART helicmild6 1151 1234 IPR001650 -
Gabi3539g00002 1292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 966 1027 IPR013083 -
Gabi3539g00002 1292 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 742 872 - -
Gabi3539g00002 1292 Pfam Zinc finger, C3HC4 type (RING finger) 976 1012 IPR018957 GO:0046872
Gabi3539g00002 1292 SMART ring_2 976 1014 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00002 Gabi-Chr3539 16696 26154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00002 431 1291 RAD5 or RAD16-like Gene Family AT1G61140 61.092 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3539g00002 SNF2_N 2.7e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00002 - - gmx:100805307 1925.6