Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3539g00001 ATGATGGCGGATGAGGTATTCGACTACCAGAGACTGTTGGCGGACGTCGGGGACGCTGATGATAACGATAACCTCTTTATTGATTTCGATACGGTTATGAGCGTTCTTGATGAGGATCGCGATCCTTCCGAGAGTAGACCTGCGGATTCTTCATTGCAAAACGTTTCACCTGGTGAATCTGGTATCCATGATAATTTTCTGCTTCAAAATGGAAATTACGTGCTTGACTATGAACATGAAAACCAAGGACCTTCATCACAGACTTGGTCTTCTCCAAATGCTTTTCCTGTTGGTTACAGGGGTTCGTTCTCTGTGGTTGAAAGTGATGAGATTTGCTACACAGAAAGGAGGGGAGTTTCTAAATGTGAGATACCTGCTTACAGTGTGGACACAAGTTTCCCTGAAGCAAATTCAAACAACATAGCCGTTTGTGGAGATAATTTGAATCTGAGTCTGTGGAAGGGTGAAAATGATAGCGAAATCAAGCATGTGGGAGATGATGTAGAATCTGAGCATGCTTCACACAGCTCTATAGTTGAGAATGTTGATGTAAATTTTGAAGACTATGGAACTTTTTTTAAAGACATTGTTGGAGTTTCTGGGCAACAGGAGAATGACTCGTGTACATCTTTTCAAATGTCATTTGTGGATACTGATATACCTTTGCACGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCTAGTGATTTTAGTGAATACAATCCATCGTTGGACTGTTACCAGGGTACAGATGATAGATCTGTTGTTGTTGACACCTCTGGTTGTTTGCCTAACGGTGTTTATCCTCAAATATTTAAAAATGAAGAAATGACGAGGAACATGAAGCTGGCAAAAATGGAGTTCTTTGCTAATACAGCACATGTGAGTAGTGGCATGCATTCCAGCATTACTGGTGGGATTTCTTTTCAAGATGGTCAATTCATGTTAGAAGATAGTAAATATCCTTCTTTTTTTCCTGGTAATGTTCTCTTAGAAGACAAATCATCAGTGGAACTGTCAACTTGCGCTTCATATATTTCAAGTGAAGGCCAATCATTACATCTCAAAGCTGAAAGAGGTGAACTGATTATGCCTTACCAAAATTCTTTTCACAGTGATGATGCTGAGCTCAATGCAGGTCAAGATGTGAAACAATTACCTGGTATTTTCCGTTCTGTTGGATGTCAGAGTTATGATTTTTTCAAGCGTGAGGATAGTGATACAGTTATAGCGACTGAGAAATCCAATTATTATCAAGATATTATGGATGGAACTGCTGATAAATTTCTAGGAAACATGGCAAATTCAAATTTAAAATCCGTAGACAAATCTTTATCCGATGCCCAGGCGTCAATTGCTTGTGAGAAGCAGTTTAATTGTGTTACGAGTGAAGGAGAGGGCAAATCAATTCAACATAGTATTGATTCACAACTTTCAAAAGGAAGTAGTGAGAGATCCAATGTTGAGGATGACTCTGATGTTTGTATTATCGAAGACATCAGTCATCCTGCACTAATGCGTCGGTCTGCAGAACTTGGGAATTCCCTTAATATGTCACAGACTTCTAGATGTGGTTATACGCGGCCTTATATGGGGGGAGGCACAAGGCCAAAGGCACGTGATGAGCAATACATATTACGAGCTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCTGATGGACTTCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCGAGTTTATACTGCTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTCAGTTGCTTAATACATGCAACAATATTCAAAAAAGTGAATTAGAAACTTTGAATTTGGATGCGGATGATGACCTGCTTCCTGAGAATGGTGGAGTGAAGAAAGAATCTAGTATGTGCCAGGACTTGTCTAGTAAAAATCCAATCAAGAGCTTGAATTTGTTGGTGCATGCAAAGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGATGAGTTGCATAATAAGGTAACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATGCAATTGTCGGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGTGAAAAAGGAATTTATGAAGATCATACTGTACCAAGTAGGAAAAGGAAATGCCCTTCCAGTTCTAGTAGAAGTAGAAAGAAGGGAAATGACAACGTAGTGCTTGAGGCCGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTACTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGAGCCTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCCTGTCGGGGACTCCGATCCAAAATGCAATTGATGATCTCTACAGCTACTTTAGATTTCTAAGATATGACCCTTATGCTGTGTACACATCATTTTGTTCTACAATTAAGACTCCAATCAACAGAAATCCATCAAAAGGTTATAGAAAGCTACAAGCTGTCTTAAAAACGATAATGTTACGTCGGACTAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCACCTAAATTTGTAGAGTTGAAAAAAGTGGATTTTTCACAGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACGGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATTCTAAAACTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATCGCTTTTAAAATTTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTCTGTGGTCACGTTTTCTGTAATCAGTGCATTTGCGAACATCGTACTGGTGATGACAATCAGTGCCCTGTATCAAATTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAGCCACGCTGAACAGTTCTCTTTCGGACGATGCTTGTGATAATTTGCCTGGTTACTCTAGTTCTGAAGTGGTGGAATCTGAGCCATGTTCTCAGGCTCAGCCATCTGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCTCTCACTGTCTAAACCACAATGCCATATTTCCAAAAAAAATTCTGTGCAGAGCTTTTTGGGGGGAAGTACTGAATGCCATGGGAGCTCCTGTAATGCTGACAATGGGAAATCCTTTGATGATTGTCCTGAGAATCAAAGTGTGTTTGTGGAGAGAAGCTCTAATGATGCAGTTGGTGCTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACCAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCAGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAACACACGCCCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCGCATCGAATTGGGCAGACACGTCCTGTTACAGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTTCATCTGCATTTGGCGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTAGATGATTTAAAATACTTGTTTATGATGTGA 3993 0.411 MMADEVFDYQRLLADVGDADDNDNLFIDFDTVMSVLDEDRDPSESRPADSSLQNVSPGESGIHDNFLLQNGNYVLDYEHENQGPSSQTWSSPNAFPVGYRGSFSVVESDEICYTERRGVSKCEIPAYSVDTSFPEANSNNIAVCGDNLNLSLWKGENDSEIKHVGDDVESEHASHSSIVENVDVNFEDYGTFFKDIVGVSGQQENDSCTSFQMSFVDTDIPLHVATSTDSSICQGSNVPSDFSEYNPSLDCYQGTDDRSVVVDTSGCLPNGVYPQIFKNEEMTRNMKLAKMEFFANTAHVSSGMHSSITGGISFQDGQFMLEDSKYPSFFPGNVLLEDKSSVELSTCASYISSEGQSLHLKAERGELIMPYQNSFHSDDAELNAGQDVKQLPGIFRSVGCQSYDFFKREDSDTVIATEKSNYYQDIMDGTADKFLGNMANSNLKSVDKSLSDAQASIACEKQFNCVTSEGEGKSIQHSIDSQLSKGSSERSNVEDDSDVCIIEDISHPALMRRSAELGNSLNMSQTSRCGYTRPYMGGGTRPKARDEQYILRAALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPQLLNTCNNIQKSELETLNLDADDDLLPENGGVKKESSMCQDLSSKNPIKSLNLLVHAKGRPSAGTLIVCPTSVLRQWADELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYAIVGMEVPKQPLVDKDDGEKGIYEDHTVPSRKRKCPSSSSRSRKKGNDNVVLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKTPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNSKTLWKSSVEMAKKLPQEKRLSLLKFLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHRTGDDNQCPVSNCKTRLSMSSVFSKATLNSSLSDDACDNLPGYSSSEVVESEPCSQAQPSDSSKIKAALEVLLSLSKPQCHISKKNSVQSFLGGSTECHGSSCNADNGKSFDDCPENQSVFVERSSNDAVGAVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVIARDKAVKDFNTRPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVSSAFGEDGTGGRQSRLTVDDLKYLFMM 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3539g00001 1330 Gene3D - 913 1329 IPR027417 -
Gabi3539g00001 1330 SMART ring_2 1014 1052 IPR001841 -
Gabi3539g00001 1330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1166 1325 IPR001650 -
Gabi3539g00001 1330 Gene3D - 668 757 IPR038718 -
Gabi3539g00001 1330 MobiDBLite consensus disorder prediction 754 773 - -
Gabi3539g00001 1330 SMART ultradead3 572 875 IPR014001 -
Gabi3539g00001 1330 MobiDBLite consensus disorder prediction 754 787 - -
Gabi3539g00001 1330 Gene3D - 772 910 IPR038718 -
Gabi3539g00001 1330 ProSiteProfiles Zinc finger RING-type profile. 1014 1053 IPR001841 -
Gabi3539g00001 1330 SUPERFAMILY RING/U-box 1011 1064 - -
Gabi3539g00001 1330 MobiDBLite consensus disorder prediction 474 495 - -
Gabi3539g00001 1330 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 673 757 - -
Gabi3539g00001 1330 Pfam SNF2-related domain 596 975 IPR000330 GO:0005524|GO:0140658
Gabi3539g00001 1330 MobiDBLite consensus disorder prediction 38 60 - -
Gabi3539g00001 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1004 1065 IPR013083 -
Gabi3539g00001 1330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 591 860 IPR014001 -
Gabi3539g00001 1330 Gene3D - 546 638 IPR038718 -
Gabi3539g00001 1330 ProSitePatterns Zinc finger RING-type signature. 1029 1038 IPR017907 -
Gabi3539g00001 1330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 440 1329 - -
Gabi3539g00001 1330 SMART helicmild6 1189 1272 IPR001650 -
Gabi3539g00001 1330 Pfam Helicase conserved C-terminal domain 1174 1272 IPR001650 -
Gabi3539g00001 1330 Pfam Zinc finger, C3HC4 type (RING finger) 1014 1050 IPR018957 GO:0046872
Gabi3539g00001 1330 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 780 910 - -
Gabi3539g00001 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 898 IPR027417 -
Gabi3539g00001 1330 CDD DEXDc_SHPRH-like 576 898 - -
Gabi3539g00001 1330 MobiDBLite consensus disorder prediction 474 488 - -
Gabi3539g00001 1330 CDD SF2_C_SNF 1175 1282 - -
Gabi3539g00001 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3539g00001 Gabi-Chr3539 16398 26154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3539g00001 469 1329 RAD5 or RAD16-like Gene Family AT1G61140 61.092 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi3539g00001 SNF2_N 2.8e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3539g00001 - - gmx:100805307 1925.6