Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3536g00004 ATGGGGAGAGCTCCTTGCTGCGAGAAAGTGGGGTTGAAGAAAGGACCATGGACTCCACAGGAAGATCTCATCCTTGTCAGTTACATCAACACACATGGCCACAAAAATTGGCGTGCCCTGCCCAAACAAGCTGGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATTTGAGATCGGATATTAAACGGGGTAACTTTACCAGGGAAGAAGAGGACACAATAATCAAGTTGCATGAAATGTTGGGTAACAGATGGTCAGCTATTGCAGCAAGATTACCAGGGCGCACAGACAACGAGATAAAGAATGTGTGGCACACCCATTTGAAAAAGAGGCTGCCACAACACAAAAATACAAAACAAATGCAAGGCCCCATACAAGAACAAGAACCCGTGAATTTTCCCACTCATCATGTGATCAAAGCCGAAATCAGAGAGAAAAGTCCACTCTCTTCTCCACAGTGTTCAAGTAGTGACTTGTCCACCCTCACCATTAGTGACAACTACGATCATAACAGTAGTTTTATTATGAGTACTATTAATCATGACATGTCCATGAATAACAGTGTTGAACATCTGGATGAGGATTTCTGGTCCGAAGTTCTGTCGGCTGATAATTCCAATGAGTTAAACAGTTTTCCAGCCATTGGTTCTGACCTGAAGTTCCAATTTCCATTCTCTCCATTATTCACCGAAGAAGGGGTCCCTTTTGCTAGCTCATCAAGTATGTACGATAGCATGGACTTTTGGTGTGATTTTTACATGAGAACCGAGGCATTACCATAA 795 0.4327 MGRAPCCEKVGLKKGPWTPQEDLILVSYINTHGHKNWRALPKQAGLLRCGKSCRLRWINYLRSDIKRGNFTREEEDTIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQHKNTKQMQGPIQEQEPVNFPTHHVIKAEIREKSPLSSPQCSSSDLSTLTISDNYDHNSSFIMSTINHDMSMNNSVEHLDEDFWSEVLSADNSNELNSFPAIGSDLKFQFPFSPLFTEEGVPFASSSSMYDSMDFWCDFYMRTEALP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3536g00004 264 CDD SANT 69 112 IPR001005 -
Gabi3536g00004 264 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3536g00004 264 CDD SANT 16 61 IPR001005 -
Gabi3536g00004 264 FunFam Transcription factor MYB15 68 140 - -
Gabi3536g00004 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3536g00004 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3536g00004 264 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3536g00004 264 FunFam MYB-related transcription factor 13 66 - -
Gabi3536g00004 264 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3536g00004 264 SMART sant 13 63 IPR001005 -
Gabi3536g00004 264 SMART sant 66 114 IPR001005 -
Gabi3536g00004 264 Gene3D - 13 66 - -
Gabi3536g00004 264 Gene3D - 68 136 - -
Gabi3536g00004 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 214 - -
Gabi3536g00004 264 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3536g00004 264 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3536g00004 Gabi-Chr3536 39673 41705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3536g00004 1 257 MYB Transcription Factor Family AT2G31180 51.550 1.03e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3536g00004 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3536g00004 K09422 - gmx:100775603 310.842