Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00052 ATGGCTTCCTTGCTCCACACAACTGCAACTATACTTCAACATAATCATAAAATCTGCTTCTTTCCTCTGAAACTCACTACCCCAAATCACATTTCTTTCTTAACTAACCGTTTCAAGAGTAACTCTGCAAAGTGCAATGCATTTTTTGATAACATCCCCAAAGACTTGTTGGAGAACACTTTTTGTCTGCACCACTTTCCTGTTTTTCGATCAGTGTTAGTGAAGTTTCAGAGTGTAAATGAAGACTTATCAGACATGCAGAGGTGGGGTTTTGTGATTTTTTCTGGGCTGACATGGATTTACTTAACTGCAAGGCCAGGTGTTCTTGTTGCAGCCATTGATGCATTCCTTTTGGCTCCTACGCAACTGGTTTTGGAAAGCTTATCTGGAAGGAGAAATCTCAAGAGGACTGATTTTCTTATTGTTGATAAGATAGGAGAAGGATCATTTGGTGTTGTTTATTCAGGTGTTTTGGTACCAAAGAATGTGGATGTAGAAGAGATGATGCAGAAGAGTGGAAGAGGCAAGGTGACAAAGTTGGATGCTAAATCTAAGGACAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATTGAAGGAGCTGAAGAATTTGGTGATTTTGAGGAGTGGTTTAATTACAGACTCTCTAGAGCAGCTCCTGAAGCATGTGCTAAGTTCCTTGGAAGTTTTGTAGCTGATGAAAACAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGGTCGCTCTCTTGCTGATTACATGGCAGATAAGAACTTTCCTTCAAACTTAGAGTCTGTCATGTTTCGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAACAAATAATGCGTCAGATCATCACATCTCTTAAGAAAATTCACAACACAGGCATTGTTCACAGGGATGTTAAGCCTTCCAACTTGGTGGTTACCAAAAGGGGACAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGAGGATTGGAAAGAATTATGTTCCCAGTTATGCCCCTTTGGATCCTGATTACTGTCCTCCTGAATTATATGTACTACCAGAAGAAACATCAAGTCTTCCACCAGAGCCAATTGCAGCTTTTCTTTCACCAATCTTGTGGCAGTTAAATAGTCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAAGCTTAAGGTCTTCATCTGGTTTGAAGAATTTCAATTTGGAAATAAAAACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCTTAAAGTCTGGTTTCCAAGTTCTTGATAGTGACTATGGTAGAGGGTGGGACTTAGCAACAAAACTTATCTCAAAGAGAGGTTCCCAAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTTGGTGGTGATCAAGCTGCTGCAGTACTTTCAAAATTAAGCTTTAGCACAAAGTGA 1506 0.3984 MASLLHTTATILQHNHKICFFPLKLTTPNHISFLTNRFKSNSAKCNAFFDNIPKDLLENTFCLHHFPVFRSVLVKFQSVNEDLSDMQRWGFVIFSGLTWIYLTARPGVLVAAIDAFLLAPTQLVLESLSGRRNLKRTDFLIVDKIGEGSFGVVYSGVLVPKNVDVEEMMQKSGRGKVTKLDAKSKDKVILKKVKVGIEGAEEFGDFEEWFNYRLSRAAPEACAKFLGSFVADENNSQFTKGGKWLVWKFEGGRSLADYMADKNFPSNLESVMFRRVLQGVDSSKRNALIIKQIMRQIITSLKKIHNTGIVHRDVKPSNLVVTKRGQIKLIDFGAATDLRIGKNYVPSYAPLDPDYCPPELYVLPEETSSLPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSSSGLKNFNLEIKTYGYDLNKWRDSTRLKSGFQVLDSDYGRGWDLATKLISKRGSQRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSFSTK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00052 501 Pfam Protein kinase domain 289 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00052 501 Gene3D Phosphorylase Kinase; domain 1 126 249 - -
Gabi3535g00052 501 ProSiteProfiles Protein kinase domain profile. 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00052 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Gabi3535g00052 501 Gene3D Transferase(Phosphotransferase) domain 1 275 484 - -
Gabi3535g00052 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 50 501 - -
Gabi3535g00052 501 CDD STKc_SNT7_plant 143 482 - -
Gabi3535g00052 501 SMART serkin_6 139 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00052 501 SUPERFAMILY Protein kinase-like (PK-like) 137 483 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00052 Gabi-Chr3535 521751 524894 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00052 109 354 MAP Kinase Kinase Gene Family AT4G29810 23.506 7.32e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gabi3535g00052 Pkinase 5.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00052 - - gmx:100795624 826.239