Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00040 ATGCTACAGTCCTACTTTGTCACAATACCAATTTTCCTACTCCTGCTTGAGTTTCCTCAAACTATAGCTGATCTACATTCACAAAAACAAGCCCTCCTTGACTTTGCTGCTGCAGTTCATCATGGTCAAAAAGTCAATTGGAACTCTAGTACTTCATTATGCACTTCTTGGGTTGGAGTTACTTGCAGTTCTAATGGCTCCCATGTGCTTTCTGTGAGGTTACCAGGTGTTGGATTGCGTGGTTCTCTCCCAGCCAATACACTTGGTAAGCTAAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACACCTTGAGTGGTAGCATTCCAAGTGACATATTTTCCATTCCTTCTCTACGCTTTATATATCTACAACATAACAACTTCTCAGGTGATATTCCTGACTCACTGCCACCCCAGCTTATGTATCTTGATTTGTCCTATAACTCTTTCTCAGGACATATTCCAGCCTTTATCCAAAACTTGACATACCTAAAAGGACTGAACCTCCAAAATAACTCTCTGAGAGGACCTATTCCTGATGTTAACCTTCCTAACCTTAAGAATTTGGATTTGAGTTTCAACTACTTAAATGGTTCAATTCCTTCAGGGTTCCATAAGTTTCCTGCCTCTTCATTTAAAGGGAATTTAATGTTATGTGGAGCACCTTTGAAACAATGTTCTTCAGTATCCCCTACTCCTACTTTGTCCCCACCAATTGTCTCCCCAAAACAAAGTGATCTCTCAAGCAAGAAGCTGAGTAAAGGTGCAAAAATTGCAATTTCTTTGGGGGGTTTTGCACTGCTATTTCTTGCAGTTATTATAGTAGTGTTCTGCTGTTTCAAGAAAAAGGAAGGGGAACAAAATGCAGCACCTAAAGACAAGGGTGAGAAGCTTAGGGAGGACTTTGGGAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTAGTATTTTTTGGAGGTTGTTCTTATAATTTTGATCTTGAGGATTTACTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGTGGAACAACATATAAAGCCATCTTGGAGGAGGGGACAACAGTTGTAGTGAAGAGGTTAAAAGAAGTGGCAGTGGGGAAAAAAGAATTTGAACAGCAATTGGAGATTGTCCAAAGGCTTGATCAGCACCCAAATGTTATTCCCCTTCGTGCTTACTACTATTCCAAGGATGAAAAACTAATGGTTTACGATTACTTAACATCTGAAAGCTTTTCCAAGTTATTGCACGGAACAAGGGAAACTGGACGAACTCCACTGGATTGGGATTCCAGATTGAAGATCATGGTGGGAGCTGCTAGGGGCATTGCTCATATCCACTCAGCTAATGGAAGGAAATTAGTCCATGGCAATATAAAATCATCTAATGTGCTTCTCTCAAAAGATCTTCAAGGCTGCATATCAGATTTTGGCTTAACTCCTCTAACAAGTTTCTCTGTCTCCTCCAGAAGTCAAGGATACCGAGCACCTGAGGTTATCGAAACCCGAAAATTCACCCAAAAATCTGATGTGTATAGTTTTGGTGTCCTCCTTCTTGAGATGCTGACTGGCAAAGCACCAGTTAAGTTTTCAGGGCATCATGATGATGTGTTTGATCTTCCAAAGTGGGTGCAATCTGTTGTAAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGATATCCAAACATTGAAGAAGAACTGGTGCAGATGCTGCAACTGGCAATGGCATGTGTGGCACTGATGCCTGACACCAGACCTTCGATGGAGGAAGTTGTTAGGATAATTGAAGAAATCAGAGCATCCATTTCTGAGAACCAGACATAA 1836 0.4139 MLQSYFVTIPIFLLLLEFPQTIADLHSQKQALLDFAAAVHHGQKVNWNSSTSLCTSWVGVTCSSNGSHVLSVRLPGVGLRGSLPANTLGKLNGLISLSLRSNTLSGSIPSDIFSIPSLRFIYLQHNNFSGDIPDSLPPQLMYLDLSYNSFSGHIPAFIQNLTYLKGLNLQNNSLRGPIPDVNLPNLKNLDLSFNYLNGSIPSGFHKFPASSFKGNLMLCGAPLKQCSSVSPTPTLSPPIVSPKQSDLSSKKLSKGAKIAISLGGFALLFLAVIIVVFCCFKKKEGEQNAAPKDKGEKLREDFGSGVQEPERNKLVFFGGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEEGTTVVVKRLKEVAVGKKEFEQQLEIVQRLDQHPNVIPLRAYYYSKDEKLMVYDYLTSESFSKLLHGTRETGRTPLDWDSRLKIMVGAARGIAHIHSANGRKLVHGNIKSSNVLLSKDLQGCISDFGLTPLTSFSVSSRSQGYRAPEVIETRKFTQKSDVYSFGVLLLEMLTGKAPVKFSGHHDDVFDLPKWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLAMACVALMPDTRPSMEEVVRIIEEIRASISENQT 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00040 611 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00040 611 PANTHER OS05G0588300 PROTEIN 6 604 - -
Gabi3535g00040 611 SUPERFAMILY L domain-like 41 218 - -
Gabi3535g00040 611 Gene3D Ribonuclease Inhibitor 139 228 IPR032675 -
Gabi3535g00040 611 FunFam pollen receptor-like kinase 1 300 406 - -
Gabi3535g00040 611 Gene3D Phosphorylase Kinase; domain 1 300 406 - -
Gabi3535g00040 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 407 611 - -
Gabi3535g00040 611 SUPERFAMILY Protein kinase-like (PK-like) 335 599 IPR011009 -
Gabi3535g00040 611 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515
Gabi3535g00040 611 Pfam Leucine Rich Repeat 185 207 IPR001611 GO:0005515
Gabi3535g00040 611 Gene3D Transferase(Phosphotransferase) domain 1 408 611 - -
Gabi3535g00040 611 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Gabi3535g00040 611 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Gabi3535g00040 611 CDD STKc_IRAK 337 602 - -
Gabi3535g00040 611 Gene3D Ribonuclease Inhibitor 26 138 IPR032675 -
Gabi3535g00040 611 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00040 Gabi-Chr3535 443839 446033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00040 22 608 Receptor kinase-like Gene Family AT5G58300 62.521 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3535g00040 Pkinase 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00040 - - gmx:100796675 986.482