Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00031 ATGTTGGCTATGAGAAATCATGGATATGCCTTGGCTGTTTCGTTTTGTTTTATCATCCTCATAGCAGTCTCACAACCAACAGATCCTTCAGAAGTAAATGCACTGATAGACATCAAGAAAAGTTTGATTGATCCCATGAACAATCTGAGGAACTGGAATAAGGGTGACCCATGTGCATCAAACTGGACTGGGGTTTGGTGTTTTGATAGGAAGGGTGCTGATGGTTACTTCCATGTCCGCGAGCTCTATTTAATGACTATGAATCTCTCTGGAAGTCTAGCACCTCAGCTTGGTCAACTATCTCAACTTGAGATACTGGATTTCATGTGGAACAATCTGACAGGCACAATACCAAAGGAGATTGGAAATATTACATCATTGAAACTCTTGCTCCTGAATGGGAATAACTTATCTGGTAGTTTACCAGATGAGCTTGGCAACCTTTCAAATTTGAATAGACTCCAAGTTGACGAAAACCAATTATCAGGTCCTATACCAGATTCATTTGCCAACTTGGTCAATGCTAGACACATCCACATGAACAACAACTCGTTTAATGGTCAACTTCCATACAAACTTTCAAACCTATCCAATCTTCTGCACTTGCTTGTGGACAACAATAACTTATCTGGCCATCTTCCACCACAATTCTCCATGTTACATGGGTTGGCAATACTCCAACTTGACAACAATAATTTCAGCGGGTATGGAATTCCTTCAACCTATGCAAACTTATCCAGTCTAGTAAAACTAAGTCTAAGAAACTGCAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAGTTTACCGGACACATACCATCAAATAAACTTTCAGACAATATGACGACCATTGATCTGTCCAATAATCGTCTCAATGGATCTATTCCTCAAAGCTTCTTATATCCTCATCTTCAAACATTGTCACTTCAAAACAATTTGCTGTCTGGGTCTATCCCTTCTAGCATATGGAAGAACATGTCCTTCAGTATGAAGGCTAAACTTACAATTGATCTCGATAACAACTCACTTTCGGATGTTTTCGGAAATCTAAACCCCCCGCCAAATGTTACCTTGAGGCTTTCTGGCAATCCTATCTGCAAGAATTCTAACATAAAAAGTATTGGTCAATATTGTGGACCTGAAGGAGATGAAGTAGCTCAAAACTCAAAAAATTCAACTGTTTGTCCAGTTCAAGCTTGTCCAGTGGATAATTTCTATGAATATGCCCCCTCTTCCCCAGTTCCTTGCTTTTGTGCAGCACCTCTGAGAGTTGGATACAGGCTGAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATACAACTCGTTTGGAATCATACATAACTCATTCCTTGAACTTAGACATCTATCAATTATCAATAGATTCATATGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTAAAAATTTTTCCTTCGTACAATGATTCCCACTCTAATGAGTTCAATAAGAGTGAGGTCCATCGCATTAAAGGTATATTTACATCATGGCGATTTCCTCGCACTGACTTTTTTGGACCATATGAACTCCTGAACTTCACTCTTCTAGGACCTTATGCAAATATAATTATTGATTCAGAGAGGAGGAAAACTAGTCCGGGCATATTAGCTGCTGCTATAATAGCAGCTATTGCTTGTGTTTTAGCAATATCTGCAATAATCATGCTCCTGATTTTTCGAAGACAGTATAAATACCAGCACAAGATTTCCAGGAAACCCTCTAATATATCTATCAAAATAGATGGCTTGAAAGCATTCACTTATAAGGAATTGGCTCTTGCTACTGACAAATTTAACAGCTCAACTAAAGTTGGTGAAGGAGGTTATGGGAATGTCTACAAGGGCATTTTATGTGATGAAACATTTGTAGCCATTAAGCGAGCAGAAGAAAGTTCCTTGCAAGGCCAAAAGGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACACCATCGGAATCTTGTCTCACTGATTGGATACTGTAGTGAAGAAGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGTAAAAATAAAAAAACCAAGGAAAGCCTAAATTTTGGTATGAGGTTACGAATTGCAATGGGTGCAGCCAAAGGCATACTATATCTGCATACAGAGGCTAACCCTCCTATATTCCACCGAGATATTAAAACCAGTAACATACTTCTGGACTCCAAGTTTATAGCTAAAGTGGCAGATTTTGGACTGTCACGGCTTGCTCCATACTTAGATGAAGAAGAAACTCCTAGATATGTGTCAACAGTTGTGAAGGGAACACCAGGTTACCTGGACCCAGAATATTTGTTAACTCATAAGTTGACTGACAAAAGTGATGTCTATAGCCTAGGAATTGTGTTTCTGGAACTTCTGACAGGCATGAGACCAATATCACATGGGAAAAACATTGTCCGCGAGGTTAATGTGGCTTGTCAAACTGGGATTATGTATTCCATTATAGACAGCGAAATGGGTTTCTATCCATCTGATTGCTTGGACAAGTTTGTAACACTGGCACTCAGTTGTTGCCTAGACAATCCACAAGAAAGACCATCAATGCTAGATGTGGTGAGGGAACTGGAACATATTATTGCAATGTTACCAGAAACTCATGAAACTTGTTTCTCTGATGTTTCCTTATGTAATTCTGGTAAAATGGCACCTTCATCATCATCATCAGGATCCAACGTGACAAGAGAGGACCAACATCTCATGTCCTCCTCGTATGTGTCTGGAAGTGATCTTGTCAGTGGTGTTGTTCCCACCATTGTTCCTCGCTGA 2868 0.3968 MLAMRNHGYALAVSFCFIILIAVSQPTDPSEVNALIDIKKSLIDPMNNLRNWNKGDPCASNWTGVWCFDRKGADGYFHVRELYLMTMNLSGSLAPQLGQLSQLEILDFMWNNLTGTIPKEIGNITSLKLLLLNGNNLSGSLPDELGNLSNLNRLQVDENQLSGPIPDSFANLVNARHIHMNNNSFNGQLPYKLSNLSNLLHLLVDNNNLSGHLPPQFSMLHGLAILQLDNNNFSGYGIPSTYANLSSLVKLSLRNCSLQGAIPDFSSIPKLTYLDLSWNQFTGHIPSNKLSDNMTTIDLSNNRLNGSIPQSFLYPHLQTLSLQNNLLSGSIPSSIWKNMSFSMKAKLTIDLDNNSLSDVFGNLNPPPNVTLRLSGNPICKNSNIKSIGQYCGPEGDEVAQNSKNSTVCPVQACPVDNFYEYAPSSPVPCFCAAPLRVGYRLKSPSFSYFPPYTTRLESYITHSLNLDIYQLSIDSYAWEEGPRLRMYLKIFPSYNDSHSNEFNKSEVHRIKGIFTSWRFPRTDFFGPYELLNFTLLGPYANIIIDSERRKTSPGILAAAIIAAIACVLAISAIIMLLIFRRQYKYQHKISRKPSNISIKIDGLKAFTYKELALATDKFNSSTKVGEGGYGNVYKGILCDETFVAIKRAEESSLQGQKEFLTEIELLSRLHHRNLVSLIGYCSEEGEQMLVYEFMPNGTLRDWISGKNKKTKESLNFGMRLRIAMGAAKGILYLHTEANPPIFHRDIKTSNILLDSKFIAKVADFGLSRLAPYLDEEETPRYVSTVVKGTPGYLDPEYLLTHKLTDKSDVYSLGIVFLELLTGMRPISHGKNIVREVNVACQTGIMYSIIDSEMGFYPSDCLDKFVTLALSCCLDNPQERPSMLDVVRELEHIIAMLPETHETCFSDVSLCNSGKMAPSSSSSGSNVTREDQHLMSSSYVSGSDLVSGVVPTIVPR 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00031 955 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
Gabi3535g00031 955 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 694 905 - -
Gabi3535g00031 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Gabi3535g00031 955 Gene3D Ribonuclease Inhibitor 191 392 IPR032675 -
Gabi3535g00031 955 SUPERFAMILY L domain-like 43 385 - -
Gabi3535g00031 955 Gene3D Transferase(Phosphotransferase) domain 1 694 907 - -
Gabi3535g00031 955 SUPERFAMILY Protein kinase-like (PK-like) 593 898 IPR011009 -
Gabi3535g00031 955 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Gabi3535g00031 955 Gene3D Phosphorylase Kinase; domain 1 589 693 - -
Gabi3535g00031 955 SMART serkin_6 618 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00031 955 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Gabi3535g00031 955 FunFam Leucine-rich repeat protein kinase family protein 582 693 - -
Gabi3535g00031 955 PANTHER RECEPTOR-LIKE PROTEIN 55 38 892 - -
Gabi3535g00031 955 Pfam Protein kinase domain 619 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00031 955 ProSiteProfiles Protein kinase domain profile. 618 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00031 955 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Gabi3535g00031 955 CDD STKc_IRAK 624 892 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00031 Gabi-Chr3535 366900 377412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00031 1 898 Receptor kinase-like Gene Family AT5G01950 62.693 0.0 1122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gabi3535g00031 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00031 - - gmx:100815005 1511.12