Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00022 ATGGAAGGGAACACGAACGCTGACATGTTCAGAGCTTCTCTGGGAGCGGGAGCATCGTCATCGCCGTCGTCTTCTTCTTCTAATTCAAGAAGATACGGAATTTTATCTGCGTCCAACATTATTCAGGCACCGTTATCGGCGTTGTTGGAGTATTCCGGTATTCTTACCACCACCACAGCCGCCGCCGCTGCCAGGTCTAATCGCCACCAACCTAACCCTGATGCCGCCCCCAATGACGGTGAGGTCTCCATTAGGATCATTGGGCCGGCGGAACACGACCATCATAATAGAGAGGAACAACCACAACCTCCTTCTGGTGGTGGTGGTGGTTTGGTGGTGGGACTTTCCCATTCCCAGAATGATGCCGCGTTGCTCTCTTCCTCTCCTCAGGGAGATGTAGAAGGTGTTTCACAGATGGGAAATGGAAATGGAAATGAAAATGTTGACGCTGAAGCTGGTGGCGATGGAGTTGGGCCCAATGGGAGGGATTCTTCCTACCAGAGATATGATATTCAGCATGCAGCCAGGTGGATTGAGCAGGTCTTGCCTTTTTCTTTGCTTCTCTTGGTGGTCTTCATCCGGCAGCATTTGCAAGGCTTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTACGGAAACAAACAGCCCTGAAGGGAGAGAGAAAAATACCTATTCTGATTGGAATTTCTGTTGCATTCGCACTTCACGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTTGTGTATCCGTTGGTCATGCTTCCTCCCAAAGATATACCACCTTTCTGGCATGCTATCTTCATCATCATGGTGAATGATACTTTGGTCCGCCAGGCTGCAATGGTATTCAAGTGTATATTGTTAATGTATTACAAGAACAGCAGAGGCCGAAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCATTGTTGCCAACACCGGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCATTCTTTGCTGCAGTGAAGGCATTGTCGCGAAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCTGGTGATCTTTGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTTCGATGCAAGCACATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAGCCTGCAGACCTCAGGTCCTTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA 1383 0.4671 MEGNTNADMFRASLGAGASSSPSSSSSNSRRYGILSASNIIQAPLSALLEYSGILTTTTAAAAARSNRHQPNPDAAPNDGEVSIRIIGPAEHDHHNREEQPQPPSGGGGGLVVGLSHSQNDAALLSSSPQGDVEGVSQMGNGNGNENVDAEAGGDGVGPNGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKIPILIGISVAFALHVVGVYWWYQNDDLVYPLVMLPPKDIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00022 460 Pfam Zinc finger, C3HC4 type (RING finger) 397 440 - -
Gabi3535g00022 460 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 23 460 IPR044235 GO:0061630|GO:1904294
Gabi3535g00022 460 CDD RING-HC_RNFT1-like 397 437 - -
Gabi3535g00022 460 ProSiteProfiles Zinc finger RING-type profile. 399 437 IPR001841 -
Gabi3535g00022 460 MobiDBLite consensus disorder prediction 16 30 - -
Gabi3535g00022 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 447 IPR013083 -
Gabi3535g00022 460 SMART ring_2 399 436 IPR001841 -
Gabi3535g00022 460 MobiDBLite consensus disorder prediction 93 164 - -
Gabi3535g00022 460 SUPERFAMILY RING/U-box 392 442 - -
Gabi3535g00022 460 MobiDBLite consensus disorder prediction 119 145 - -
Gabi3535g00022 460 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3535g00022 460 ProSitePatterns Zinc finger RING-type signature. 414 423 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00022 Gabi-Chr3535 260259 265263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00022 20 460 C3H Transcription Factor Family AT5G01960 71.041 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00022 - K22379 gmx:100818546 691.034