Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00020 ATGGCTGCGAATTCTGAGAATTTCTCATCTGTATCGTCTCTGTCTACTTCACGGGTTCACAGGGACACTGATTTTGTCCAGGTTGCAGTGTGTTCTCTTTGCCAAAAGGCCCTATCACCTGATAATGAGATTACAAGTGATCTTTCAACCAGTGGCGTATGTGGTGATTGTAAATTTTTATTACTTGAAGACTTTGGGAATCATACTGTTTCTCAAAGCTCTCAAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCAGTTGAGAATATGTTATCACAACAGCTCCCCTATATGGTTAATACTATGGGGCAAAACCAATCCACTGCATCTGCAGAGGATGATCAACTTGTAGATGGTGACTCCCCTGCTTGGTCATTGCAGTATTCTAGTACACATACTACCCCTGGTGGGTCTAGAAGCTGGGGGCAGGTTCTATCTGATACCGACAGTGATGGTTTTGATAATTGGAGCTCTCTTTATGGTGAAAATGAATCAAGTGCGAGTCTTAGACGGTATAGGGTTCCCCATGGCGAGACTGATTCTTTCTCGTTCAGTGCTTATGGAGGTGACTCAGATATCTCTATGGATAGACACAGTTTTGTAGGCACGGGAATGTTTAATTTACTAGATGTGGGAGATGAGTTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCCTCAGCCAATGGAACTCTGATATGGAAGACAATGAGGAAGAAGAGGATGAAGACGGAGAAGAGGAGGAGGAGGAGGATGAAGAGGAGGAAATGGAACTAGCTGAGGATGAGGAAGCTGTAGCCACTGCTCGCCTTCAAATTGTTTTCACCTCAAATTGGGATTATCTCATGGGGCAAACTTTGGAGGATGCTGATTTACCTCATGGAGCAAACTCGGGGGATTATCTTGATGCTAGACGCTTTGAAGACCTGCTTGAGCATCTTGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGTGTCTTTTGTGAATAATCTGCCCCGTGTAGTCATTGGCAAGGAACATGAGAAGCATGGCGAGCTAGTTTGTGCCATTTGCAAGGATGTCTTGGCCCCTGGCACTGAAGTCAATCAGCTTCCCTGCTCTCACCTATATCACGCATCTTGCATTTTGCCATGGTTGAGGGCAAGAAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACTGATGATAAGGATTATGAAGAAGGAAAGCAGAATATTGGTAGTATAGATATGATTCATGAGAGGCAGCAATTAGATATGATGGATGATAGTTCCTCCGATGGAGCTGAAGTGAGTGAAGAGGATGGTACTAGTCAAGGTGGAATACAGCATAGGGGAGTTGTGAGCTTGGGTTCTACCATGAATTCTTCTGCAGCAAGAGGTGGTAGAGGAAGATGGTTTTATCTTGCTGCAGCTCCAATTGTTAGTCTAGTGGGCATCGTTCTTGTCTTGTGGTTAGGTAACAATTCACAGATTGAAGGGAGTGGACATCTGGGTGGTCGCAACTTGTCTGGGCAAAATCAGCATGTGGTATTTGCCTCCCCAAACCAAAGGGAGAGTAGAAACAGAAGATGGTGGTGTCCATTCTAA 1614 0.4486 MAANSENFSSVSSLSTSRVHRDTDFVQVAVCSLCQKALSPDNEITSDLSTSGVCGDCKFLLLEDFGNHTVSQSSQRRLRGRFRHNSSESVENMLSQQLPYMVNTMGQNQSTASAEDDQLVDGDSPAWSLQYSSTHTTPGGSRSWGQVLSDTDSDGFDNWSSLYGENESSASLRRYRVPHGETDSFSFSAYGGDSDISMDRHSFVGTGMFNLLDVGDEFDSDTDIDPMHAGLSQWNSDMEDNEEEEDEDGEEEEEEDEEEEMELAEDEEAVATARLQIVFTSNWDYLMGQTLEDADLPHGANSGDYLDARRFEDLLEHLAENDSSRRGAPPAAVSFVNNLPRVVIGKEHEKHGELVCAICKDVLAPGTEVNQLPCSHLYHASCILPWLRARNSCPLCRYELPTDDKDYEEGKQNIGSIDMIHERQQLDMMDDSSSDGAEVSEEDGTSQGGIQHRGVVSLGSTMNSSAARGGRGRWFYLAAAPIVSLVGIVLVLWLGNNSQIEGSGHLGGRNLSGQNQHVVFASPNQRESRNRRWWCPF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00020 537 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 237 401 - -
Gabi3535g00020 537 CDD RING-H2_PA-TM-RING 355 397 - -
Gabi3535g00020 537 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
Gabi3535g00020 537 MobiDBLite consensus disorder prediction 439 453 - -
Gabi3535g00020 537 MobiDBLite consensus disorder prediction 221 267 - -
Gabi3535g00020 537 SMART ring_2 356 396 IPR001841 -
Gabi3535g00020 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 403 IPR013083 -
Gabi3535g00020 537 MobiDBLite consensus disorder prediction 237 266 - -
Gabi3535g00020 537 SUPERFAMILY RING/U-box 339 403 - -
Gabi3535g00020 537 Coils Coil 235 274 - -
Gabi3535g00020 537 FunFam E3 ubiquitin-protein ligase RING1-like isoform A 316 403 - -
Gabi3535g00020 537 MobiDBLite consensus disorder prediction 428 453 - -
Gabi3535g00020 537 Pfam Ring finger domain 356 397 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00020 Gabi-Chr3535 234383 237061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00020 26 537 C3H Transcription Factor Family AT5G01980 42.351 2.18e-115 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00020 - - gmx:100797923 795.423