Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00009 ATGGGAAACTGCGGTACCAGAGAGGAATCCGCCGTCGTTTCCAATGCTCAAGTTCAGCAGCTTCATCATCACGCGTCGTCGTTCGGCGCTAGTGGAAGGAATCAAAATGGAGAGAAGAAGCAGAATCAGAAACACAATAATCTGACCGAGTCCGTTTCGGATCTGAGCGAGTCTTGTTCGACGACACCGCGCAGCAACAACTACAACAACAACACGGTGCTTTATACTCATGTTATCGCTTTCACGCTTTACGAGTTGGAAACGATAACGAAGAGCTTCCGTGGCGACTATATCTTAGGCGAAGGAGGGTTCGGTACCGTTTACAAAGGTTACATTGATGAGAATGTGAGGGTTGGACTCAAGTCCTTACCCGTTGCGGTCAAGGTTTTGAACAAGGAAGGACTCCAGGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTTAGGCATCCGAATCTGGTTAAGTTGATTGGTTACTGCTGCGAGGATGATCATAGATTGCTTGTCTATGAGTTCATGTTTCGAGGAAGTTTAGAAAATCACTTATTCCGAAAGGCAACTGTCCCCTTGTCATGGGCTACAAGAATGATGATTGCTCTTGGGGCTGCCAAAGGGCTTGCCTTTCTCCACAATGCTGAAAGACCTGTAATCTATCGTGACTTCAAGACATCTAATATATTATTGGACTCTGACTATACTGCCAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAGGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTTATGACTGGCCACCTGACAGCCAGGAGTGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGCTTCTAACGGGAAGGAAATCTGTTGACAAGACAAGACCTGGAAGGGAACAGAGCTTGGTAGATTGGGCACGGCCAAAGCTCAATGACAAAAGAAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTAGCTTACTACTGTTTGAGTCAAAATCCCAAAGCGAGGCCACTAATGAGTGATGTAGTGGAAACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCAGGTGAAGTCTCATTATCAGGATCAAATAGTGGGAGTGAAGGGCCTTTTGCTATGAGCAAAATTTCTGACTACCGAATGCGTCACAAGTTTTCGAACAATGTTGGTCCAGGTGCTACTTGTCGGTCTCCAAACCCAAATTGCTCCCCAGGTGCTCCAGCAGCATGCCGGGTCAGATGA 1317 0.4624 MGNCGTREESAVVSNAQVQQLHHHASSFGASGRNQNGEKKQNQKHNNLTESVSDLSESCSTTPRSNNYNNNTVLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGREQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSGSEGPFAMSKISDYRMRHKFSNNVGPGATCRSPNPNCSPGAPAACRVR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00009 438 Pfam Protein tyrosine and serine/threonine kinase 98 370 IPR001245 GO:0004672|GO:0006468
Gabi3535g00009 438 FunFam Probable serine/threonine-protein kinase PBL8 176 388 - -
Gabi3535g00009 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi3535g00009 438 MobiDBLite consensus disorder prediction 23 63 - -
Gabi3535g00009 438 SUPERFAMILY Protein kinase-like (PK-like) 65 371 IPR011009 -
Gabi3535g00009 438 MobiDBLite consensus disorder prediction 46 63 - -
Gabi3535g00009 438 FunFam Serine/threonine-protein kinase BIK1 60 175 - -
Gabi3535g00009 438 Gene3D Transferase(Phosphotransferase) domain 1 176 383 - -
Gabi3535g00009 438 CDD STKc_IRAK 99 373 - -
Gabi3535g00009 438 PANTHER OS01G0588500 PROTEIN-RELATED 52 374 - -
Gabi3535g00009 438 Gene3D Phosphorylase Kinase; domain 1 53 175 - -
Gabi3535g00009 438 ProSitePatterns Protein kinases ATP-binding region signature. 99 128 IPR017441 GO:0005524
Gabi3535g00009 438 ProSiteProfiles Protein kinase domain profile. 93 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00009 438 MobiDBLite consensus disorder prediction 417 438 - -
Gabi3535g00009 438 MobiDBLite consensus disorder prediction 23 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00009 Gabi-Chr3535 109273 113461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00009 57 383 Glycoside Hydrolase AT3G07070 51.351 5.89e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3535g00009 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00009 - - gmx:102662348 808.52