Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00008 ATGGGAAACTGCGGTACCAGAGAGGAATCCGCCGTCGTTTCCAATGCTCAAGAGAAGAAGCAGAATCAGAAACACAATAATCTGACCGAGTCCGTTTCGGATCTGAGCGAGTCTTGTTCGACGACACCGCGCAGCAACAACTACAACAACAACACGGTGCTTTATACTCATGTTATCGCTTTCACGCTTTACGAGTTGGAAACGATAACGAAGAGCTTCCGTGGCGACTATATCTTAGGCGAAGGAGGGTTCGGTACCGTTTACAAAGGTTACATTGATGAGAATGTGAGGGTTGGACTCAAGTCCTTACCCGTTGCGGTCAAGGTTTTGAACAAGGAAGGACTCCAGGGACATCGAGAGTGGCTTACGGAGGTGAATTTTCTAGGGCAGCTTAGGCATCCGAATCTGGTTAAGTTGATTGGTTACTGCTGCGAGGATGATCATAGATTGCTTGTCTATGAGTTCATGTTTCGAGGAAGTTTAGAAAATCACTTATTCCGAAAGGCAACTGTCCCCTTGTCATGGGCTACAAGAATGATGATTGCTCTTGGGGCTGCCAAAGGGCTTGCCTTTCTCCACAATGCTGAAAGACCTGTAATCTATCGTGACTTCAAGACATCTAATATATTATTGGACTCTGACTATACTGCCAAGCTTTCTGATTTTGGACTAGCTAAAGCAGGACCACAGGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTTATGACTGGCCACCTGACAGCCAGGAGTGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGCTTCTAACGGGAAGGAAATCTGTTGACAAGACAAGACCTGGAAGGGAACAGAGCTTGGTAGATTGGGCACGGCCAAAGCTCAATGACAAAAGAAAGCTCCTACAAATAATTGATCCTAGATTGGAGAATCAATACTCAGTGAGGGCAGCACAGAAAGCATGTAGCTTAGCTTACTACTGTTTGAGTCAAAATCCCAAAGCGAGGCCACTAATGAGTGATGTAGTGGAAACATTGGAACCCTTACAAAGTTCTAGTGTTGGTGCAGGTGAAGTCTCATTATCAGGATCAAATAGTGGGAGTGAAGGGCCTTTTGCTATGAGCAAAATTTCTGACTACCGAATGCGTCACAAGTTTTCGAACAATGTTGGTCCAGGTGCTACTTGTCGGTCTCCAAACCCAAATTGCTCCCCAGGTGCTCCAGCAGCATGCCGGGTCAGATGA 1257 0.4598 MGNCGTREESAVVSNAQEKKQNQKHNNLTESVSDLSESCSTTPRSNNYNNNTVLYTHVIAFTLYELETITKSFRGDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGREQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGAGEVSLSGSNSGSEGPFAMSKISDYRMRHKFSNNVGPGATCRSPNPNCSPGAPAACRVR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00008 418 FunFam Serine/threonine-protein kinase BIK1 40 155 - -
Gabi3535g00008 418 ProSitePatterns Protein kinases ATP-binding region signature. 79 108 IPR017441 GO:0005524
Gabi3535g00008 418 MobiDBLite consensus disorder prediction 1 43 - -
Gabi3535g00008 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gabi3535g00008 418 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672|GO:0006468
Gabi3535g00008 418 Gene3D Phosphorylase Kinase; domain 1 13 155 - -
Gabi3535g00008 418 Gene3D Transferase(Phosphotransferase) domain 1 156 363 - -
Gabi3535g00008 418 MobiDBLite consensus disorder prediction 8 43 - -
Gabi3535g00008 418 PANTHER OS01G0588500 PROTEIN-RELATED 31 354 - -
Gabi3535g00008 418 MobiDBLite consensus disorder prediction 397 418 - -
Gabi3535g00008 418 ProSiteProfiles Protein kinase domain profile. 73 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3535g00008 418 FunFam Probable serine/threonine-protein kinase PBL8 156 368 - -
Gabi3535g00008 418 SUPERFAMILY Protein kinase-like (PK-like) 45 351 IPR011009 -
Gabi3535g00008 418 CDD STKc_IRAK 79 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00008 Gabi-Chr3535 109272 113461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00008 37 360 Glycoside Hydrolase AT3G07070 51.515 4.55e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3535g00008 PK_Tyr_Ser-Thr 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00008 - - gmx:102662348 778.474