Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3535g00006 ATGGCTGCTTGTGTTTTGTTCAATGGTGAAGACGGAAGTGGAAGTGGTAATAGTCCTTTAACAACAAGTGCCTCTAACTCCAACAGCAACATGAGTGGTGAAGAACACCACACACTTCAACAACAACAACAACAACATGGTATGCCTCAGCAGCTCCGAAAAATAGTGAGAAAGAGAATGGCTTCTGAGATGGAAGTAGTTCATCCCACACCACCACCACCACCACCACAATACAACTCTTCCTCCACCACAACCATTGATTATCCTAGGTTTCCTCGCCGAAGCACCACCAACATAACAGCAGAAAAAGGGGTCAAAACAACAACCTTAGCCGCAGGTATTTGTAACTATGATTATAATAATAATAATAATAATAGTAATAGTAATAATAATAACAGTAACACCATCAATAATAATAATAATAATAATAATAATACTTCATCAAGAGATAACGTTGGTGTTCCAAATTACCCCACTGTGACGGTCACAACCAACTACTCCACTATGCTTCTACCTTCTTCTTCTGCTTCTGCTATCTCTATACCTTCTGCTACTACCATTCACCACCATCATTTTCAAGGACTTGAAAGCCAAGACCAGAACAACAACCCTGTACCTGCAGTGTGTGGATTCTCTGGTTTGCCACTGTTTCCATCTCAAAGCCAAAGAAATAGAGACAACAACAACAATAACAACATCAGAAACAGTAGTAGCAGTACTATAAGTGGTGGTAACATTGTTGACGTGGTTGCTTCTTCTTCTCCTTCCATGGAAGACAACTCAGGTAATTGGATTGATGGTATATTGAAGGATCTTATCCACAGTTCAAACAGTGTTTCCATTCCTCAGCTTATCAACAACGTGAGGGAGATTATATATCCTTGCAACCCAAACCTTGCTATGGTTCTTGAATATAGGCTTCGTCTTCTCACTGAGTCCACCACCTCACAAAACTCAAAAAGGACCAATGAAACTGTGCCTAATCCTATGTCCTCAGTGAAGCTCATGAATCATGGCATTGTTCCTCCCAATTTGCATTTCACAGATTCATCAGGTTCTGCTGTTATGAATCAACATATGTTGTCCAATTGGGTTGTTCCTCCTCCTCCAATCACCACTCACCACCACCATGGCAACAACAACAATAACCCTTCAGTTTCATTGGTTACTTTACCTTCACCACCATCAACACAACAGGGTTATTCTCCACCACAAGAGAAGCATCAGCAGCAAGAAAATCAAAACCACCCTCAGATTAATCAAGAGGAAGATCTCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCTAGCAGCACTGAAATGGTGGTAACAAGAAAGAAGAAAGAGGAGATGCAACAACAGAAGAAGAAAGATGAAGAAGGGTTGCACCTCCTCACTTTGCTTCTTCAGTGTGCAGAAGCAGTTTCAGCTGAGAATCTAGAAGATGCAAACAAGATGCTGTTAGAGATTTCCCAACTCTCCACGCCATTTGGTACATCAGCACAACGTGTAGCAGCATATTTCTCTGAAGCCATATCAGCAAGACTAGTGAGTTCATGCTTGGGAATATACGCAACACTTCCACATACCCATCATAGCCACAAGGTAGCATCAGCTTTCCAAGTCTTCAATGGGATTAGTCCTTTTGTGAAGTTCTCACATTTCACAGCAAACCAAGCAATTCAAGAAGCATTTGATAGGGAAGAGAGGGTGCACATCATAGATCTGGATATAATGCAAGGTTTGCAATGGCCTGGTCTCTTTCACATTCTGGCTTCAAGACCTGGTGGACCCCCTTATGTGAAGCTCACTGGACTTGGTACCTCCATGGAAGCACTTGAAGCTACGGGTAAGCGTTTATCTGATTTTGCAAATAAACTTGGCCTTCCCTTTGAGTTCTTTCCCGTTGCTGAAAAAGTTGGGAACCTTGACCCTGAGAGGCTCAATGTTAGCAAGACTGAAGCTGTTGCTGTTCATTGGTTGCAACATTCCCTCTACGATGTCACTGGTTCAGACACAAACACTTTGTGGCTCTTGCAGAGACTGGCTCCTAAAGTGGTGACAGTGGTAGAGCAAGACCTGAGCAATGCTGGTTCTTTCTTAGGAAGGTTTGTGGAAGCCATACACTACTATTCAGCACTTTTTGATTCCCTTGGTTCAAGCTATGGGGAAGAAAGTGAGGAGAGACATGTGGTGGAACAGCAACTACTTTCTAGGGAGATTCGTAATGTTCTTGCAGTTGGAGGGCCATCAAGGACTGGAGAACTCAAGTTCCATAACTGGAGGGAAAAACTTCAACAGTGTGGTTTTAGAGGTATCTCACTGGCTGGTAATGCTGCTACACAAGCTAGTTTACTCCTTGGGATGTTCCCTTCTGAAGGGTATACCTTAGTGGAGGACAATGGTATCCTTAAACTTGGTTGGAAAGACCTTTGCTTGCTTACTGCTTCAGCTTGGAGACCTCCCTTTCATAGTAGCTCATCCATTAACTAA 2496 0.4291 MAACVLFNGEDGSGSGNSPLTTSASNSNSNMSGEEHHTLQQQQQQHGMPQQLRKIVRKRMASEMEVVHPTPPPPPPQYNSSSTTTIDYPRFPRRSTTNITAEKGVKTTTLAAGICNYDYNNNNNNSNSNNNNSNTINNNNNNNNNTSSRDNVGVPNYPTVTVTTNYSTMLLPSSSASAISIPSATTIHHHHFQGLESQDQNNNPVPAVCGFSGLPLFPSQSQRNRDNNNNNNIRNSSSSTISGGNIVDVVASSSPSMEDNSGNWIDGILKDLIHSSNSVSIPQLINNVREIIYPCNPNLAMVLEYRLRLLTESTTSQNSKRTNETVPNPMSSVKLMNHGIVPPNLHFTDSSGSAVMNQHMLSNWVVPPPPITTHHHHGNNNNNPSVSLVTLPSPPSTQQGYSPPQEKHQQQENQNHPQINQEEDLSAAAAAAAAATASSTEMVVTRKKKEEMQQQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHHSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVKLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGELKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSSSSIN 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 1 101 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 437 458 - -
Gabi3535g00006 831 ProSiteProfiles GRAS family profile. 456 821 IPR005202 -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 366 415 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 123 156 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 443 458 - -
Gabi3535g00006 831 Pfam GRAS domain family 466 821 IPR005202 -
Gabi3535g00006 831 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 423 816 IPR005202 -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 80 101 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 374 415 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 216 240 - -
Gabi3535g00006 831 MobiDBLite consensus disorder prediction 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3535g00006 Gabi-Chr3535 71113 74040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3535g00006 410 822 GRAS Transcription Factor Family AT3G54220 79.856 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi3535g00006 GRAS 4.8e-123 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3535g00006 - - gmx:100806779 1049.27