Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3533g00002 ATGACAAATATCAAACAGAAAGAGCTTCAGAGTTTTCAGAATCAGAATCACAGTGAGAGAACAAATGAAAATGAAAATGAAAATGGAAGATCCTTAGTCACAGTCACAGTCACAGACAGCCCTTATCCTCCTCCAACGGCTCTCTACCAAGACCTTACTCGTGATGCAAACCTCTTCTGGGAAAAGCTTCAATCTTTTCACAATTCATATGGCACCAAATTTAAGGTTCCTACTATAGGAGGAAAACCACTAGATCTTTATCGTCTTTTCATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTGATTGCAGATCGTAAATGGAAGGAAGTGATTCTAATGTTCAAGTTCCGGGATACCATAACGAGTGCATCATTTATGGTGCGCAGATACTATCTATCGTTGCTTTATCACTTTGAGCAAGTGTACTACTTTCGGAAGCAAGTTCCTCCTTCCTTGACACCTGAACCTTTGAATAGGAGCCTTGTCAATTGCTCCACAACCATTAGGGAAGGTGCTGCTGTGAATGATTTACCTGTTCAGGCTAGTCCGGTGCAGCTGCATGGTTCTGTGGTACCGGGAACAATTGATGGCAAATTTGATGGTGGATATGTAGTTACAGTGAGTCTGGGTTCTGAACAGCTGAAAGGTATTCTGTATCATGTTCCTAACAATGTGTCCCAGAGTTCTTATGCTGAAGGCATGTCTAGTTCGCGGAATCGCAAGAGATCAAGATTGGCATTACGCGATCCATCTCGGCCGAAGTCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAGAATTATGCCAGGCTAAAGCCCTCATTTTATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTCACTGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGCTGAGAGATAAGGAAAGATACAGGGCTGAAATGTTGGAATACAAATCCAATAATTCAACTCCTCAATAG 987 0.4225 MTNIKQKELQSFQNQNHSERTNENENENGRSLVTVTVTDSPYPPPTALYQDLTRDANLFWEKLQSFHNSYGTKFKVPTIGGKPLDLYRLFIEVTSRGGLEKVIADRKWKEVILMFKFRDTITSASFMVRRYYLSLLYHFEQVYYFRKQVPPSLTPEPLNRSLVNCSTTIREGAAVNDLPVQASPVQLHGSVVPGTIDGKFDGGYVVTVSLGSEQLKGILYHVPNNVSQSSYAEGMSSSRNRKRSRLALRDPSRPKSNRSGYNFFFAENYARLKPSFYGQERAISKRIGFLWSNLTEAERQVYQEKGLRDKERYRAEMLEYKSNNSTPQ 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3533g00002 328 SUPERFAMILY HMG-box 247 324 IPR036910 -
Gabi3533g00002 328 MobiDBLite consensus disorder prediction 238 252 - -
Gabi3533g00002 328 SMART bright_3 54 145 IPR001606 GO:0003677
Gabi3533g00002 328 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Gabi3533g00002 328 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Gabi3533g00002 328 MobiDBLite consensus disorder prediction 1 29 - -
Gabi3533g00002 328 MobiDBLite consensus disorder prediction 229 255 - -
Gabi3533g00002 328 SMART hmgende2 253 322 IPR009071 -
Gabi3533g00002 328 MobiDBLite consensus disorder prediction 1 19 - -
Gabi3533g00002 328 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Gabi3533g00002 328 SMART ARID_2 50 140 - -
Gabi3533g00002 328 Gene3D High mobility group box domain 236 328 IPR036910 -
Gabi3533g00002 328 SUPERFAMILY ARID-like 51 152 IPR036431 GO:0003677
Gabi3533g00002 328 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 254 321 IPR009071 -
Gabi3533g00002 328 CDD HMG-box_AtHMGB9-like 254 320 - -
Gabi3533g00002 328 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 23 326 - -
Gabi3533g00002 328 Pfam HMG (high mobility group) box 254 321 IPR009071 -
Gabi3533g00002 328 Gene3D - 47 154 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3533g00002 Gabi-Chr3533 23868 34392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3533g00002 14 326 ARID Transcription Factor Family AT3G13350 51.562 2.04e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi3533g00002 ARID 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3533g00002 - - lja:Lj3g3v1933050.2 489.189