Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3530g00007 ATGAGTTTCAGAGACAAGAACGTAGGAGGAGGAGAAAGGGAATGTGAAGAATCGGTGTTGGGGAGCAATGAATCAAAATCAGTGAGGCAAAATGGGTTGTTAACAAACACGCAGTTAACAATTGATGAGAATCTTCTGGTTGACCCTAAACTGCTCTTTATTGGGTCCAAGATTGGTGAAGGTGCTCATGGTAAAGTTTATGAAGGAAGGTCAGTGGCAAAGCCTTGGATGTTTTTCGTGTCCTTTTTTTCTTTTTCTTTTTTTAAAAAAATGGCTGTTAATTCATGTGAACATTTTAATAGGTCAAATTCCCTTGCATGTAAGACCCCACAGTGGTATGGAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTTATAGTCACAGAGCTATTACCCGGGATGTCACTGCGGAAATACTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGCCTACATGCCAATGGGATCATACATAGAGATCTGAAACCCGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACAGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGATTGCAGCAAGAAAGACCCAACCTTCCGGATGA 981 0.4108 MSFRDKNVGGGERECEESVLGSNESKSVRQNGLLTNTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRSVAKPWMFFVSFFSFSFFKKMAVNSCEHFNRSNSLACKTPQWYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHVAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKIAARKTQPSG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3530g00007 326 PANTHER SERINE-THREONINE PROTEIN KINASE 50 310 - -
Gabi3530g00007 326 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3530g00007 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gabi3530g00007 326 Gene3D Transferase(Phosphotransferase) domain 1 175 325 - -
Gabi3530g00007 326 MobiDBLite consensus disorder prediction 1 23 - -
Gabi3530g00007 326 CDD STKc_MAP3K-like 58 308 - -
Gabi3530g00007 326 SUPERFAMILY Protein kinase-like (PK-like) 51 311 IPR011009 -
Gabi3530g00007 326 SMART serkin_6 52 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00007 326 Gene3D Phosphorylase Kinase; domain 1 11 171 - -
Gabi3530g00007 326 ProSiteProfiles Protein kinase domain profile. 52 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00007 326 Pfam Protein kinase domain 115 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3530g00007 Gabi-Chr3530 47883 51999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3530g00007 40 326 MAP Kinase Kinase Kinase AT5G01850 67.846 2.28e-142 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3530g00007 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3530g00007 - - pvu:PHAVU_008G083700g 480.33