Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3530g00006 ATGAGTTTCAGAGACAAGAACGTAGGAGGAGGAGAAAGGGAATGTGAAGAATCGGTGTTGGGGAGCAATGAATCAAAATCAGTGAGGCAAAATGGGTTGTTAACAAACACGCAGTTAACAATTGATGAGAATCTTCTGGTTGACCCTAAACTGCTCTTTATTGGGTCCAAGATTGGTGAAGGTGCTCATGGTAAAGTTTATGAAGGAAGGTATGGAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTTATAGTCACAGAGCTATTACCCGGGATGTCACTGCGGAAATACTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGCCTACATGCCAATGGGATCATACATAGAGATCTGAAACCCGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACAGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAAAGACCCAACCTTCCGGATGATATATCACCTGATCTTGCTTTTGTCATACAATCATGCTGGGTTGAAGAGCCTAACATGAGACCAAGCTTTAGTCAGATTATCCGCTTGCTCAATGCATTTCTCTTCACACTCTCACCACAATCTCCTCCTTTGCCAGAACCTGACAATGAACCTGAGGTGGCTACAACAAGTAATGGTACCATTACCGAGTTTTCTGCTCGAAACAGAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCCAAGAGGACCAAAAACTAA 1110 0.4198 MSFRDKNVGGGERECEESVLGSNESKSVRQNGLLTNTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHVAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFVIQSCWVEEPNMRPSFSQIIRLLNAFLFTLSPQSPPLPEPDNEPEVATTSNGTITEFSARNRGKFAFLRHLFSSKRTKN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3530g00006 369 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3530g00006 369 FunFam Kinase suppressor of Ras 1 41 131 - -
Gabi3530g00006 369 CDD STKc_MAP3K-like 58 313 - -
Gabi3530g00006 369 SUPERFAMILY Protein kinase-like (PK-like) 47 336 IPR011009 -
Gabi3530g00006 369 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00006 369 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00006 369 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Gabi3530g00006 369 Gene3D Transferase(Phosphotransferase) domain 1 135 335 - -
Gabi3530g00006 369 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Gabi3530g00006 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Gabi3530g00006 369 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 314 - -
Gabi3530g00006 369 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3530g00006 369 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Gabi3530g00006 369 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Gabi3530g00006 369 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Gabi3530g00006 369 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Gabi3530g00006 369 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3530g00006 Gabi-Chr3530 47462 51999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3530g00006 40 369 MAP Kinase Kinase Kinase AT5G01850 75.141 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3530g00006 PK_Tyr_Ser-Thr 7.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3530g00006 - - qsa:O6P43_016485 632.484