LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3530g00005	ATGAGTTTCAGAGACAAGAACGTAGGAGGAGGAGAAAGGGAATGTGAAGAATCGGTGTTGGGGAGCAATGAATCAAAATCAGTGAGGCAAAATGGGTTGTTAACAAACACGCAGTTAACAATTGATGAGAATCTTCTGGTTGACCCTAAACTGCTCTTTATTGGGTCCAAGATTGGTGAAGGTGCTCATGGTAAAGTTTATGAAGGAAGGTCAGTGGCAAAGCCTTGGATGTTTTTCGTGTCCTTTTTTTCTTTTTCTTTTTTTAAAAAAATGGCTGTTAATTCATGTGAACATTTTAATAGGTCAAATTCCCTTGCATGTAAGACCCCACAGTGGTATGGAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTTATAGTCACAGAGCTATTACCCGGGATGTCACTGCGGAAATACTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGCCTACATGCCAATGGGATCATACATAGAGATCTGAAACCCGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACAGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAAAGACCCAACCTTCCGGATGATATATCACCTGATCTTGCTTTTGTCATACAATCATGCTGGGTTGAAGAGCCTAACATGAGACCAAGCTTTAGTCAGATTATCCGCTTGCTCAATGCATTTCTCTTCACACTCTCACCACAATCTCCTCCTTTGCCAGAACCTGACAATGAACCTGAGGTGGCTACAACAAGTAATGGTACCATTACCGAGTTTTCTGCTCGAAACAGAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCCAAGAGGACCAAAAACTAA	1236	0.4126	MSFRDKNVGGGERECEESVLGSNESKSVRQNGLLTNTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRSVAKPWMFFVSFFSFSFFKKMAVNSCEHFNRSNSLACKTPQWYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHVAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFVIQSCWVEEPNMRPSFSQIIRLLNAFLFTLSPQSPPLPEPDNEPEVATTSNGTITEFSARNRGKFAFLRHLFSSKRTKN	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3530g00005	411	MobiDBLite	consensus disorder prediction	1	20	-	-
	Gabi3530g00005	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	214	226	IPR008271	GO:0004672\|GO:0006468
	Gabi3530g00005	411	SMART	serkin_6	52	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3530g00005	411	ProSiteProfiles	Protein kinase domain profile.	52	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3530g00005	411	SUPERFAMILY	Protein kinase-like (PK-like)	47	378	IPR011009	-
	Gabi3530g00005	411	PRINTS	Tyrosine kinase catalytic domain signature	326	348	IPR001245	GO:0004672\|GO:0006468
	Gabi3530g00005	411	PRINTS	Tyrosine kinase catalytic domain signature	282	304	IPR001245	GO:0004672\|GO:0006468
	Gabi3530g00005	411	PRINTS	Tyrosine kinase catalytic domain signature	170	183	IPR001245	GO:0004672\|GO:0006468
	Gabi3530g00005	411	PRINTS	Tyrosine kinase catalytic domain signature	208	226	IPR001245	GO:0004672\|GO:0006468
	Gabi3530g00005	411	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gabi3530g00005	411	Gene3D	Phosphorylase Kinase; domain 1	11	171	-	-
	Gabi3530g00005	411	Gene3D	Transferase(Phosphotransferase) domain 1	177	376	-	-
	Gabi3530g00005	411	CDD	STKc_MAP3K-like	58	355	-	-
	Gabi3530g00005	411	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	52	356	-	-
	Gabi3530g00005	411	Pfam	Protein tyrosine and serine/threonine kinase	115	355	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3530g00005	Gabi-Chr3530	47462	51999	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3530g00005	40	411	MAP Kinase Kinase Kinase	AT5G01850	67.172	3.06e-179	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Gabi3530g00005		PK_Tyr_Ser-Thr	1.2e-54	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3530g00005	-		-	qsa:O6P43_016485	612.068