Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3530g00004 ATGAGTTTCAGAGACAAGAACGTAGGAGGAGGAGAAAGGGAATGTGAAGAATCGGTGTTGGGGAGCAATGAATCAAAATCAGTGAGGCAAAATGGGTTGTTAACAAACACGCAGTTAACAATTGATGAGAATCTTCTGGTTGACCCTAAACTGCTCTTTATTGGGTCCAAGATTGGTGAAGGTGCTCATGGTAAAGTTTATGAAGGAAGGTCAAATTCCCTTGCATGTAAGACCCCACAGTGGTATGGAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACTTCAGAAGAAAGAGCTTCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGAGAATCTTGTTAAGTTTATTGGAGCGTGTAAGGATCCTCTTATGGTTATAGTCACAGAGCTATTACCCGGGATGTCACTGCGGAAATACTTAATGAGTATCCGTCCTAAACTATTAGACCTTCATGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGCCTACATGCCAATGGGATCATACATAGAGATCTGAAACCCGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTGACTGAAATGATGACAGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAAAGACCCAACCTTCCGGATGATATATCACCTGATCTTGCTTTTGTCATACAATCATGCTGGGTTGAAGAGCCTAACATGAGACCAAGCTTTAGTCAGATTATCCGCTTGCTCAATGCATTTCTCTTCACACTCTCACCACAATCTCCTCCTTTGCCAGAACCTGACAATGAACCTGAGGTGGCTACAACAAGTAATGGTACCATTACCGAGTTTTCTGCTCGAAACAGAGGAAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCCAAGAGGACCAAAAACTAA 1143 0.4217 MSFRDKNVGGGERECEESVLGSNESKSVRQNGLLTNTQLTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRSNSLACKTPQWYGDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPKLLDLHVAINFALDIARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPDDISPDLAFVIQSCWVEEPNMRPSFSQIIRLLNAFLFTLSPQSPPLPEPDNEPEVATTSNGTITEFSARNRGKFAFLRHLFSSKRTKN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3530g00004 380 MobiDBLite consensus disorder prediction 1 20 - -
Gabi3530g00004 380 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 325 - -
Gabi3530g00004 380 PRINTS Tyrosine kinase catalytic domain signature 251 273 IPR001245 GO:0004672|GO:0006468
Gabi3530g00004 380 PRINTS Tyrosine kinase catalytic domain signature 295 317 IPR001245 GO:0004672|GO:0006468
Gabi3530g00004 380 PRINTS Tyrosine kinase catalytic domain signature 139 152 IPR001245 GO:0004672|GO:0006468
Gabi3530g00004 380 PRINTS Tyrosine kinase catalytic domain signature 177 195 IPR001245 GO:0004672|GO:0006468
Gabi3530g00004 380 Gene3D Phosphorylase Kinase; domain 1 40 142 - -
Gabi3530g00004 380 Gene3D Transferase(Phosphotransferase) domain 1 146 345 - -
Gabi3530g00004 380 ProSiteProfiles Protein kinase domain profile. 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00004 380 ProSitePatterns Protein kinases ATP-binding region signature. 58 90 IPR017441 GO:0005524
Gabi3530g00004 380 SMART serkin_6 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3530g00004 380 MobiDBLite consensus disorder prediction 1 27 - -
Gabi3530g00004 380 CDD STKc_MAP3K-like 58 324 - -
Gabi3530g00004 380 Pfam Protein tyrosine and serine/threonine kinase 54 324 IPR001245 GO:0004672|GO:0006468
Gabi3530g00004 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Gabi3530g00004 380 SUPERFAMILY Protein kinase-like (PK-like) 47 347 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3530g00004 Gabi-Chr3530 47461 51999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3530g00004 40 380 MAP Kinase Kinase Kinase AT5G01850 72.877 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3530g00004 PK_Tyr_Ser-Thr 8.9e-60 CL0016