Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3530g00001 ATGCAACGCCGTCTTCTTGAGACCGAGCTTAGCATGCCACCATCTTATGAGAACAAAACCCACGATTATTCGTTCATCAACGACGCGAACTTTGACACCAACATGGTGATCGTATTGGCAGCACTCTTGTGCGCATTGATATGCGCTCTCGGGTTGAACTCCATGGCGCGTTGTGCTCTTCGTTGTAGCAGAAATTTCTCAGACGCGACATCAGAACAAACCGCCGCGAGGCTCGCCAAAACGGGGCTCAAGAAACGCGAGCTGAGACAGATTCCGGTGGCGGTGTACGGCTCTGGCGAGAATATTCCGGCGACGGAGTGCCCCATCTGCCTCGGGGAGTTCGAGAAAGGGGACAAGGTTCGAATGCTGCCAAAGTGCAATCACGGGTTCCATGTGAGTTGCATTGACACGTGGCTGTTGTCGCATTCTTCGTGCCCCAATTGTCGCAATTCGCTGCTCAAGAATAATGATGGAAGGGTCGCCGGAGCAAGCTCGTCGGAAAATGGGTCCGACCGACGAGGCAACGTCGTCGTGATCGTCGAGCAGGCAAGTTGA 555 0.5405 MQRRLLETELSMPPSYENKTHDYSFINDANFDTNMVIVLAALLCALICALGLNSMARCALRCSRNFSDATSEQTAARLAKTGLKKRELRQIPVAVYGSGENIPATECPICLGEFEKGDKVRMLPKCNHGFHVSCIDTWLLSHSSCPNCRNSLLKNNDGRVAGASSSENGSDRRGNVVVIVEQAS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3530g00001 184 PANTHER RING-H2 FINGER PROTEIN ATL78 4 169 IPR044602 GO:0016567|GO:0016740
Gabi3530g00001 184 CDD RING-H2_EL5-like 106 149 - -
Gabi3530g00001 184 SMART FANCL_C_2 103 156 - -
Gabi3530g00001 184 SUPERFAMILY RING/U-box 88 155 - -
Gabi3530g00001 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Gabi3530g00001 184 SMART ring_2 107 148 IPR001841 -
Gabi3530g00001 184 FunFam RING-H2 finger protein ATL72-like 74 153 - -
Gabi3530g00001 184 Pfam Ring finger domain 106 149 IPR001841 -
Gabi3530g00001 184 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3530g00001 Gabi-Chr3530 16403 17709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3530g00001 1 168 C3H Transcription Factor Family AT3G10910 57.062 1.44e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3530g00001 - K19040 gmx:100814602 269.626