Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi352g00001 ATGGATGTATCTGTGGAAAGTGAAGAAAGACCCAAATTCAGAGATATCAGACGCTATTTTTGCAAATATTGCGGCGTCTGCAGGTCCAAAAAAACCCTCATCACCTCTCACATCAATTCTAACCATAAGGAGGAGGTGGAAAAGACAGGAGTTGAAATAGATCCTGAAGTAGAGGGTGTAAAATCCAACACTTGCGAGGAATGTGGTGCCAGTTTCAAAAAGCATGCCTACTTGTTGCAGCACATGCTATGTCATTCGTTTGAGAGACCATATGTGTGTACGGTCAATGATTGTCAGGCTAGTTACAGAAGAAAGGATCACTTGACTCGTCACAGTCTACAGCATCAAGGGAAAACTTTTAAATGTCCTATTGAGAATTGCAACCTTGACTTCTCTATCCTGAGCAATATGAAAAGACATGTCAGTGAGTTGCATGATGACAGTTCTACTACCTCAACTAGTGTTCAAAGTCAGAAGCAGTATGTATGTCCAGAAATTGGCTGTGGAAAGGTTTTCAGATTTGAATCAAAGCTACGAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACACTTCACTAATGCCCAATGCCTTAAAGCCCATATAAATTCCTGCCATCAATATGTTACCTGTGACACTTGTGGGACCAAGCAACTGAAGAAGAATATTAAGCGGCACCTCCGTACACATGAAGCTGGCACTTCATCAGAGGCATTTCAATGTGAATTTAAGGGTTGTGGCTGCACATTCTCAACCAAATCTAATCTTCGTAAGCATGAGAAGGCTGTGCACTTTCAAAAAAAACCTTTTGTGTGTTGCTTTCCTGAATGTGGCATGAGCTTTGCTTACAAACATGTCAGAGATAACCATGAAAAAACTGGGAAACATGTTTATACCCTTGGGGATTTTGAAGCAGCTGACGAAGAATTCAGGTCAAGGTCGAGGGGAGGGATGAAGAGAAAGTGTCCTACTGTTGAAATGTTTGTCAGGAAGAGAGTTACACCTCCTAGTCAATTGGAGAACTGGTTACTTATGCTGGATACTGACTAA 1086 0.4153 MDVSVESEERPKFRDIRRYFCKYCGVCRSKKTLITSHINSNHKEEVEKTGVEIDPEVEGVKSNTCEECGASFKKHAYLLQHMLCHSFERPYVCTVNDCQASYRRKDHLTRHSLQHQGKTFKCPIENCNLDFSILSNMKRHVSELHDDSSTTSTSVQSQKQYVCPEIGCGKVFRFESKLRKHEDSHVKLESVDVVCLEPGCMKHFTNAQCLKAHINSCHQYVTCDTCGTKQLKKNIKRHLRTHEAGTSSEAFQCEFKGCGCTFSTKSNLRKHEKAVHFQKKPFVCCFPECGMSFAYKHVRDNHEKTGKHVYTLGDFEAADEEFRSRSRGGMKRKCPTVEMFVRKRVTPPSQLENWLLMLDTD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi352g00001 361 Gene3D Classic Zinc Finger 117 158 - -
Gabi352g00001 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 190 IPR013087 -
Gabi352g00001 361 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Gabi352g00001 361 Pfam Zinc finger, C2H2 type 251 276 IPR013087 -
Gabi352g00001 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Gabi352g00001 361 Pfam Zinc finger, C2H2 type 161 185 IPR013087 -
Gabi352g00001 361 SUPERFAMILY beta-beta-alpha zinc fingers 158 185 IPR036236 -
Gabi352g00001 361 Gene3D Classic Zinc Finger 246 311 - -
Gabi352g00001 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Gabi352g00001 361 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Gabi352g00001 361 PANTHER ZINC FINGER PROTEIN 7 351 - -
Gabi352g00001 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 19 42 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 282 308 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 91 115 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 63 85 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 251 276 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 120 145 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 193 218 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 161 185 IPR013087 -
Gabi352g00001 361 SMART c2h2final6 221 242 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
Gabi352g00001 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Gabi352g00001 361 Gene3D Classic Zinc Finger 92 116 - -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Gabi352g00001 361 Gene3D Classic Zinc Finger 5 91 - -
Gabi352g00001 361 SUPERFAMILY beta-beta-alpha zinc fingers 232 285 IPR036236 -
Gabi352g00001 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Gabi352g00001 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Gabi352g00001 361 Gene3D Classic Zinc Finger 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi352g00001 Gabi-Chr352 16460 19248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi352g00001 87 311 C2H2 Transcription Factor Family AT1G72050 50.362 6.24e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi352g00001 zf-C2H2 0.00038 CL0361