Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3529g00001 ATGGGAAAATTGAGAACAGGAACGCTGTTGCATGGGGTTCTTCACGTTACAATTTTTGAGGTTGATAAGTTTTATGGTAAAGATTGCTGCCACTGTTTCCCCAAGCTATTTGAAGAAACTATTCCAATTGGAAAAGATACTGCCAGATTATATGCAACCATTAAATTAGGCAATACTACTGTAGGCAGAACTAAAGTTACAAACAATGATCACTCTTATCTTCAGTGGAATGAATCTTTTCAAATTTATACTGCTCACGTGTCAACTGATGTTGTGTTTTGTATCAAAGAAGAAGATCCAATTGGGGCAAAAGTGATTGCGAGAGCTTTTCTGCCCATTGAAGAATTAGGAAATGGAGAAAAACTTGATAGATGGCTACAGATCCTGAATAAGAAAAATAAACCTCTCGAAGGAGGTCCTAGAATTCATGTAGAGTTACAGTTTTCTGATGTCACTCAGGACATGAACTGGTCTCGAGGGATTACAAGTCCTGAGTTTCCAGGAGTCCCACACACTTACTTCACACAGAGAAGTGGTTGCAGGGTCACGCTTTACCAGGATGCTCATATTCCAGACAATTTTTTCCCGGAAATTCCTTTCACTGGCGGCAAGTATTATGCGCATAACCGATGCTGGGAAGAAGTCTTTGATGCCATTTACAAGGCAAAGCACATGATATATATAGCAGGATGGTCTGTCTATACCGAAATTACCTTGATTAGGGAGTTGAGTAGGAAAAAACCAGGAGGAGATTTGACACTTGGGGAACTTCTCAAAATGAAGGCTGGTGATGGAGTTACAGTCCTAATGCTTGTTTGGGATGATAGAAGTTCAATAAAGTTGCTAAAGAAGGATGGAGTGATGGCAACTCATGATGAAGATACAGAAAGTTATTTCCGTAACACTGGGGTGCATTGTGTATTATGTCCTCGTAATCCTGATAATGGGCAAAGCATTGTCCAAGACATTGAGGTTGCCACCATGTTTACACATCATCAGAAGATCCTAGTTGTTGATGGTGAGATGCCCGGTGGGAATTTAGAGAGGAGGAGGAGAATTTTGAGCTTCATTGGAGGTATTGATCTCTGTGATGGGAGATATGACACCCCAATGCATTCGATTTTTAGGACCCTGGGGACAGCTCACCATGATGATTTTCATCAACCAAATTTCAAAGGTGCCTCAATTGCAAAAGGTGGACCAAGAGAGCCTTGGCATGACATACATTGTTGCTTAGAAGGACCAATTGCCTGGGATGTTCTGATTAATTTTGAGCAGAGGTGGAAGAAACAAGGTAAGGAGAATGTTTCACTTGTTGAGCTTGGACAACTTGATGACATTTTCGTACCTCCATCTCCAGTAATGTCCCCTGGAGACAAAGAAACATGGAATGTTCAGTTGTTTCGATCCATTGACGGAGGAGCTGCAGCATATGGCCTCCCAAATACCCAAGAGGATGCAGCCAGGTATGGTCTTCTGGTTGGGAAAGATCATATCATTGACCGAAGCATCCAGAATGCGTATATTAATGCTATCAGGAGAGCTAAAAACTTTATCTACATAGAAAACCAATATTTCCTTGGAAGCTCTTTTTGCTGGAATTCAAATGACCTCCAGGTTGAGGAGGTGGGAGCCTTAAATCTGCTTCCTAAAGAACTGTCTCTCAAACTCGTTAGCAAGATCGAAGCAGCTGAGAGATTCACTGTCTATGTAGTTATTCCAATGTGGCCAGAGGGTATTCCTGACAGTGCAGCTGTCCAGAGCATACTGAATTGGCAAAGAAGGACAATGGATATGATGTACACCGATATTGTTCAGGCTCTACAAGCCAAAGGAATTAAAGCAAACCCAAAAGACTATTTGAGTTTCTTTTGCCTTGGAAATCGAGAGAAGATGAATAATGAAGAATATGAGCCTTCTAAAAAGCCAGAACTGGAATCAGATTACAGCAGAGCTCAACATGCAAGGCGGTTCATGATCTATGTCCATGCCAAAATGATGATAGTTGATGACGAATACATAATTATTGGATCAGCTAACATCAATGAGCGGTCAATGAATGGGGCCAGGGACACAGAGATTGCAATGGGAGGGTACCAACCATATCAATTAGCTACAGAGAAGCCAGCCAGGGGTCAGATCCATGGCTTTAGAATGGCATTGTGGTATGAGCACTTAGGCTTTCTGGATGACTCCTTTCTTACTCCAGAGAGTTTGGAATGTGTCAGACAAATAAACCAGATTTCCGAAAGGTACTGGGAACTCTATTACAGTGACACTCTAGATGATGACTTGCCTGGACATTTGCTTAGTTATCCCGTTAGAGTTGCTGAAACTGGAGAGGTCACAACCAAACCTGGTGCGGAGTACTTCCCAGACACGAAGGCACGAATTTTTGGGTCCAAATCCGTACTTCCAACGATCCTAACTACTTAA 2436 0.4204 MGKLRTGTLLHGVLHVTIFEVDKFYGKDCCHCFPKLFEETIPIGKDTARLYATIKLGNTTVGRTKVTNNDHSYLQWNESFQIYTAHVSTDVVFCIKEEDPIGAKVIARAFLPIEELGNGEKLDRWLQILNKKNKPLEGGPRIHVELQFSDVTQDMNWSRGITSPEFPGVPHTYFTQRSGCRVTLYQDAHIPDNFFPEIPFTGGKYYAHNRCWEEVFDAIYKAKHMIYIAGWSVYTEITLIRELSRKKPGGDLTLGELLKMKAGDGVTVLMLVWDDRSSIKLLKKDGVMATHDEDTESYFRNTGVHCVLCPRNPDNGQSIVQDIEVATMFTHHQKILVVDGEMPGGNLERRRRILSFIGGIDLCDGRYDTPMHSIFRTLGTAHHDDFHQPNFKGASIAKGGPREPWHDIHCCLEGPIAWDVLINFEQRWKKQGKENVSLVELGQLDDIFVPPSPVMSPGDKETWNVQLFRSIDGGAAAYGLPNTQEDAARYGLLVGKDHIIDRSIQNAYINAIRRAKNFIYIENQYFLGSSFCWNSNDLQVEEVGALNLLPKELSLKLVSKIEAAERFTVYVVIPMWPEGIPDSAAVQSILNWQRRTMDMMYTDIVQALQAKGIKANPKDYLSFFCLGNREKMNNEEYEPSKKPELESDYSRAQHARRFMIYVHAKMMIVDDEYIIIGSANINERSMNGARDTEIAMGGYQPYQLATEKPARGQIHGFRMALWYEHLGFLDDSFLTPESLECVRQINQISERYWELYYSDTLDDDLPGHLLSYPVRVAETGEVTTKPGAEYFPDTKARIFGSKSVLPTILTT 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3529g00001 811 PANTHER PHOSPHOLIPASE D 8 801 IPR015679 -
Gabi3529g00001 811 Gene3D Endonuclease Chain A 200 443 - -
Gabi3529g00001 811 FunFam Phospholipase D delta 202 447 - -
Gabi3529g00001 811 Pfam Phospholipase D Active site motif 659 685 IPR001736 GO:0003824
Gabi3529g00001 811 Pfam Phospholipase D Active site motif 327 366 IPR001736 GO:0003824
Gabi3529g00001 811 Pfam Phospholipase D C terminal 730 802 IPR024632 -
Gabi3529g00001 811 Gene3D C2 domain 10 159 IPR035892 -
Gabi3529g00001 811 ProSiteProfiles C2 domain profile. 1 126 IPR000008 -
Gabi3529g00001 811 Pfam C2 domain 15 127 IPR000008 -
Gabi3529g00001 811 PIRSF PLD_plant 3 811 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi3529g00001 811 SUPERFAMILY Phospholipase D/nuclease 152 452 - -
Gabi3529g00001 811 Gene3D Endonuclease Chain A 464 702 - -
Gabi3529g00001 811 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 150 IPR035892 -
Gabi3529g00001 811 SUPERFAMILY Phospholipase D/nuclease 502 742 - -
Gabi3529g00001 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 658 685 IPR001736 GO:0003824
Gabi3529g00001 811 SMART pld_4 658 685 IPR001736 GO:0003824
Gabi3529g00001 811 SMART pld_4 327 366 IPR001736 GO:0003824
Gabi3529g00001 811 SMART C2_3c 13 125 IPR000008 -
Gabi3529g00001 811 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 327 366 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3529g00001 Gabi-Chr3529 13518 17094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3529g00001 9 811 Phospholipase D Gene Family (Wang group) AT3G15730 63.490 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3529g00001 K01115 - qsa:O6P43_002376 1252.27