Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi3525g00001 | ATGGGACAAAACCATGGTGAAGGAAAAAAGATAAGAGATAGTAAGAAAAATAGATGGTCTATTGGGTCCATTTTCATGCATGCTGATGGCCATGATTGGTTTCTTATGGTTTTCGGTATCTTTGGGGCAATTGGTGAAGGCTTGACCACCCCTCTAGCGTTGTATATAAGTAGCCTCATGATGAATAATATTGGGAGTTCATCTTCCATGGAAGGAAACACTTTCATCCATAACATCAATAAGAATTCAGTGGCTTGGTTATGTTTGGCTGGTTGGTCTTTTATTGTTTGCTTCCTCGAGGGTTATTGTTGGACAAGAACAAGTGAAAGACAAGCTGCGAGAATGAGATATAGGTATCTAAAAGCTGTTCTCAGACAAGAAGTTGCATACTTTGATTTGCATGTCACGAGTACATCAGAGATCATCACTAGCGTCTCCAATGACAGCCTCATAATTCAAGATGTTCTTAGTGAGAAGGTACCAAATTTCTTGATGAACTTTTCTACATTCGTTGGGAGTTACATAGCGGCTTTTGCAATGATGTGGAGATTGGCTATTTTGGGGTTTCCTTTTGTGGTTCTTCTATTGATCCCTGGTATAATTTATGGGAAAACTTTGATGGGATTGGGTAGCAAGATCAGAGAAGAGTATAATCAAGCTGGTATAGTAGCAGAACAAACAATATCTTCCATCAGAACCGTTTATTCATTTGTGGGAGAAAACAAGACCATAACTGCTTTCTCTAATGCTCTAAGAGGGACTGTTAAGTTGGGGTTGAAACAAGGCTTAGCTAAAGGTTTAGCCATTGGAAGCAACGGTATTGTTTTCATTATGTGGTCTTTCATGTGCTATTATGGTAGCAGAATGGTCATTTACCATGGCGCTAAAGGAGGAACAGTTTTCGCAGTTGGAGCAGCCATATCTGTTGGTGGATTAGGGTTAGGAGCTTGTTTATCCAATGTGAAGTACTTCTCTGAAGCAAGTTTGGCAGGGGAACGTATAAAGGGAGTGATAAAAAGAGTTCCAAAGATTGATTCTGACAATATGGTTGGGGAGATTCTTGAAAACGTTTCTGGGGAAGTGGAATTTGACCATGTTGAATTTGCTTACCCATCAAGACCAGACAGCATTATCCTTAATGATTTATGCCTTACGATTCCTGCATGCAAGACAGTGGCCTTGGTGGGTGAGAGTGGCTCAGGAAAATCAACTGTTATACAACTTTTGCAGAGATTTTATGACCCACTTGGGGGAGAGATACGTCTTGATGGGGTGGCTATTCATAAGTTGCAGCTCAAGTGGCTTAGGTCACAGATGGGTTTGGTTAGCCAAGAGCCTGCTCTATTTGCAACCAGCATTAAAGAGAACATACTTTTTGGTAAGGAGGATGCCACAGAGGATGAGGTTGTTGAGGCTTCAAAAGCTTCCAATGCTCATAATTTCATTTCACTGCTCCCTCAGGGTTACCATACACAGGTTGGAGAGAGAGGGATTCAAATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCACGAGCAATGATTAAGAAACCTCGAATCCTTCTCCTAGATGAAGCAACCAGTGCACTAGACACCGAGTCTGAACGACTCGTCCAAGAAGCACTCGACAACGCAGCCATGGGTTGCACCGCCATCATCATCGCTCACCGCTTATCCACCATTCAAAACGCCGACGTCATCGCCGTCATGAAACGCGGAAAGGTCATAGAGACAGGTTCACATAACGAACTCATCCAAAACGAAAACGGCCTCTACAACTCCATGGTTCGTCTCCAACAAACACTCAAATTATCCAAAACAGAAGAAACAGAATCCGTTACTCCTCTAACCGTCTCAACCACTTCTACTGTCCCAGACATCCACAACAACAACAATAACAACAACCTTGTAGGCCCCACCAACTCAGTTATTGCAGAAGAGAAGAGAGTTCAAGTGCCATCATTTAAGAGATTGCTTGCACTGAATGCTCCAGAATGGAAGCATGCAGTTATGGGGTGTTTGAATGCGATGCTATTCGGTGCGGTTCAACCTGTTTATGCATTCGTGGTGGGGTCCATGATATTAGTGTATTTTAACACGGATCATGAGGAGATAAAAAATAAGACGAGGGTGTATTCGCTTTGCTTTTTGGGTCTTGCTGTGTTCTCTTTTGTTGTTAATATTGGACAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACCAAACGGGTCAGAGAGGCTATGCTTTATAAGATACTCACTTTTGAAGTTGGGTGGTTTGACCAGGACCAAAATTCAAGCGGTGCTATTTGTTCTAGACTTGCCAAAGATGCTAACGTGGTAAGATCATTAGTGGGAGATAGAATGGCTTTGGTGGTACAAACTTTATCAGCAGTAATAACAGCTTACACTATGGGTCTTGTCATTTCATGGAGACTTAACATTGTCATGATAGCAGTTCAGCCCATTATCATAGCATGCTTTTACATAAGGCGTGTCCTCTTCAAGAGCATGTCCAATAAGGCCATTATAGCCCAAGAACAAAGCAGCAAGTTAGCTGCTGAAGCTGTTTCAAATCTTCGAACCATAACTGCTTTCTCTTCTCAAGACAGAGTCCTCAAAATGCTTGAAAAGGCCCAAGATGGCCCAAGCCAAGAGAGCATTCGACAATCATGGTTCGCAGGTATTGCACTTGCATGTTCTCAATTTCTCACGTTATGTACTTGGGTCCTAAACTATTGGTATGGTGGCAAGCTTATCTCAAATGGGTACATCACAACAAAAGCATTGTTTGAGAGCTTGATGGTTGTTGTGAGCACAGGACGGGTCATTGGAGAGGCTGGAAGCATGACCATTGACCTTGCCAAAGGTGCTGATGTTGTGGGCTCAATTTTTGCAATCCTAGATAGGGACACAAAAATTGAGCCCGATGACCCAAATGGGTACAAGCCTGAGAAGTTAATGGGCCAAATTGAACTCTACGATGTTCATTTTGCATACCCAACTAGGCCTAATGTGATTATCTTCCAAGGCTTCTCAATTAAAATTAAGGCAGGGAAATCAACAGCATTGGTGGGGCAAAGTGGGTCAGGCAAATCAACCATCATAGGGTTAATAGAGAGATTCTATGACCCACTTAAAGGAATAGTGACAATAGATGGTAGAGACATAAAGTCATATAACCTAAAGTGGCTAAGGAAGAACATAGCACTAGTGGGTCAAGAGCCAACCTTGATTGGTGGAACTATTAGAGAGAACATTGCATATGGAGCATGTGATGACAAGATTGATGAGGCTGAGATCATAGAGGCAGCAAGGGCAGCAAATGCTCATGATTTCATAGCTAGCATGAAGGATGGGTATGAGACATGGTGTGGGGACAAAGGAGTACAACTTTCAGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCTATTTTGAAGAATCCCAAGGTGTTGTTGCTGGATGAGGCCACAAGTGCATTAGATAGTCAATCAGAGAAGGTGGTGCAAGATGCATTGGTGAGAGTAATGGTGGAGAGGACCAGTGTTGTGGTGGCACATAGGTTGAGCACCATACACAATTGTGATGTTATTGCTGTCTTAGATAAGGGGAAGGTGGTGGAGATAGGTAACCACTCATCTTTGTTGGCCAAAGGACCAAGGGGAGCTTATTACACTTTGGTAAGTATTCAAACCACACATGCAGCTACAGATGCATATAGAGAGCAAGAATTGCAAAATCCATTGGAAGAAGAAGAAGATGATAACGATCAAAGAAGCTCAAAACCTCTTTGTGGCAATGATAACATTCAAGTTGATGTAAATAATATAAACCTTGATTATATTCCTTCACATGATAATTTGCAATGTGCGTATGATGATTTGAATGATAGCTTGTTGAACTTGAAAAATAGAAATTTGGTTTCAATACAAAGTATTTGCTTCATTGAAAATCAAATTGAATCTTTGAAAAATATATATGATTTTCAAGAAGAGAACATATCCTTGAACTATGAATCCTCAACCATTCTTAAAAATTGCATTGATGTTGATAATCAAGTTGAGGAACTATCATCTAAACTTTCCATAATTGATAATCCTACATGCTCATATTCCATTTTTGAAAATGAAAATAATAATGATACTTTTGTACATGGAAAACCTATAAATGATTGTGGAAATAATAGTTTGGATAATGATAATAGCAAGAAAGCCAAAAATTTGAAAGTTGAGCTTAAAAAGAACAAGTTATCTTGCAAACACATTGTATGTAATTATTGTGGTAAAGTAGGACATATTTCTCATTTGTGCTATCATAGAAGAAATTCTTGTATGAGAAATAAATCGGTTTGGGTTGTCAAAAATTCTATGAATGTTATTCCTAACCCTCAAGGACCCAAGATGAAATGGGTACCAAAAAGTCCTCCTAGCTTTTCCAATGTGCAGAAAATTATTCGAAATGATGGACTAAAAGGTCAAGAGAAAAAGAAATCATCAAGGAAAATGCTTCCTAGGCCTAATGATGGAATTATCAATCAAAGAAGTAATGGAACTTCAGTCAAAGCTTCTCACATGCACAAGATGGAACCCAGAAGGTTCAAAATCCAAAAAGAGAAGCAATGGATAAGAAAAAGTCTCCACTTGATTACAAAGGCCAAGGTATCAAATATCTTTACCTCTTATGCTTATTCATATGCGAATCCAATGAATATGAG | 4721 | 0.4014 | MGQNHGEGKKIRDSKKNRWSIGSIFMHADGHDWFLMVFGIFGAIGEGLTTPLALYISSLMMNNIGSSSSMEGNTFIHNINKNSVAWLCLAGWSFIVCFLEGYCWTRTSERQAARMRYRYLKAVLRQEVAYFDLHVTSTSEIITSVSNDSLIIQDVLSEKVPNFLMNFSTFVGSYIAAFAMMWRLAILGFPFVVLLLIPGIIYGKTLMGLGSKIREEYNQAGIVAEQTISSIRTVYSFVGENKTITAFSNALRGTVKLGLKQGLAKGLAIGSNGIVFIMWSFMCYYGSRMVIYHGAKGGTVFAVGAAISVGGLGLGACLSNVKYFSEASLAGERIKGVIKRVPKIDSDNMVGEILENVSGEVEFDHVEFAYPSRPDSIILNDLCLTIPACKTVALVGESGSGKSTVIQLLQRFYDPLGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEDEVVEASKASNAHNFISLLPQGYHTQVGERGIQMSGGQKQRIAIARAMIKKPRILLLDEATSALDTESERLVQEALDNAAMGCTAIIIAHRLSTIQNADVIAVMKRGKVIETGSHNELIQNENGLYNSMVRLQQTLKLSKTEETESVTPLTVSTTSTVPDIHNNNNNNNLVGPTNSVIAEEKRVQVPSFKRLLALNAPEWKHAVMGCLNAMLFGAVQPVYAFVVGSMILVYFNTDHEEIKNKTRVYSLCFLGLAVFSFVVNIGQHYSFAYMGEYLTKRVREAMLYKILTFEVGWFDQDQNSSGAICSRLAKDANVVRSLVGDRMALVVQTLSAVITAYTMGLVISWRLNIVMIAVQPIIIACFYIRRVLFKSMSNKAIIAQEQSSKLAAEAVSNLRTITAFSSQDRVLKMLEKAQDGPSQESIRQSWFAGIALACSQFLTLCTWVLNYWYGGKLISNGYITTKALFESLMVVVSTGRVIGEAGSMTIDLAKGADVVGSIFAILDRDTKIEPDDPNGYKPEKLMGQIELYDVHFAYPTRPNVIIFQGFSIKIKAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGRDIKSYNLKWLRKNIALVGQEPTLIGGTIRENIAYGACDDKIDEAEIIEAARAANAHDFIASMKDGYETWCGDKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKVVQDALVRVMVERTSVVVAHRLSTIHNCDVIAVLDKGKVVEIGNHSSLLAKGPRGAYYTLVSIQTTHAATDAYREQELQNPLEEEEDDNDQRSSKPLCGNDNIQVDVNNINLDYIPSHDNLQCAYDDLNDSLLNLKNRNLVSIQSICFIENQIESLKNIYDFQEENISLNYESSTILKNCIDVDNQVEELSSKLSIIDNPTCSYSIFENENNNDTFVHGKPINDCGNNSLDNDNSKKAKNLKVELKKNKLSCKHIVCNYCGKVGHISHLCYHRRNSCMRNKSVWVVKNSMNVIPNPQGPKMKWVPKSPPSFSNVQKIIRNDGLKGQEKKKSSRKMLPRPNDGIINQRSNGTSVKASHMHKMEPRRFKIQKEKQWIRKSLHLITKAKVSNIFTSYAYSYANPMNM | 1573 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi3525g00001 | 1573 | CDD | ABC_MTABC3_MDL1_MDL2 | 361 | 599 | - | - | |
Gabi3525g00001 | 1573 | ProSitePatterns | ABC transporters family signature. | 1133 | 1147 | IPR017871 | GO:0005524|GO:0016887 | |
Gabi3525g00001 | 1573 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 992 | 1230 | IPR003439 | GO:0005524 | |
Gabi3525g00001 | 1573 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 659 | 975 | - | - | |
Gabi3525g00001 | 1573 | FunFam | ABC transporter B family member 4 | 982 | 1241 | - | - | |
Gabi3525g00001 | 1573 | FunFam | ABC transporter B family member 4 | 351 | 608 | - | - | |
Gabi3525g00001 | 1573 | Gene3D | - | 351 | 600 | IPR027417 | - | |
Gabi3525g00001 | 1573 | MobiDBLite | consensus disorder prediction | 1491 | 1505 | - | - | |
Gabi3525g00001 | 1573 | FunFam | ABC transporter B family member 1 | 23 | 358 | - | - | |
Gabi3525g00001 | 1573 | SUPERFAMILY | ABC transporter transmembrane region | 28 | 342 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3525g00001 | 1573 | SUPERFAMILY | ABC transporter transmembrane region | 653 | 977 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3525g00001 | 1573 | SMART | AAA_5 | 1019 | 1213 | IPR003593 | GO:0016887 | |
Gabi3525g00001 | 1573 | SMART | AAA_5 | 388 | 581 | IPR003593 | GO:0016887 | |
Gabi3525g00001 | 1573 | Coils | Coil | 1287 | 1307 | - | - | |
Gabi3525g00001 | 1573 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 981 | 1233 | IPR027417 | - | |
Gabi3525g00001 | 1573 | ProSitePatterns | ABC transporters family signature. | 500 | 514 | IPR017871 | GO:0005524|GO:0016887 | |
Gabi3525g00001 | 1573 | MobiDBLite | consensus disorder prediction | 1491 | 1528 | - | - | |
Gabi3525g00001 | 1573 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 36 | 334 | - | - | |
Gabi3525g00001 | 1573 | Pfam | ABC transporter | 1011 | 1161 | IPR003439 | GO:0005524 | |
Gabi3525g00001 | 1573 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 37 | 326 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3525g00001 | 1573 | Pfam | ABC transporter transmembrane region | 36 | 302 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3525g00001 | 1573 | Pfam | ABC transporter transmembrane region | 672 | 939 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3525g00001 | 1573 | CDD | ABC_MTABC3_MDL1_MDL2 | 992 | 1233 | - | - | |
Gabi3525g00001 | 1573 | FunFam | Putative ABC transporter B family member 8 | 638 | 980 | - | - | |
Gabi3525g00001 | 1573 | Gene3D | ABC transporter type 1, transmembrane domain | 24 | 958 | IPR036640 | GO:0005524|GO:0016020 | |
Gabi3525g00001 | 1573 | MobiDBLite | consensus disorder prediction | 1248 | 1268 | - | - | |
Gabi3525g00001 | 1573 | PANTHER | ABC TRANSPORTER B FAMILY | 7 | 721 | IPR039421 | - | |
Gabi3525g00001 | 1573 | Gene3D | - | 982 | 1244 | IPR027417 | - | |
Gabi3525g00001 | 1573 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 361 | 597 | IPR003439 | GO:0005524 | |
Gabi3525g00001 | 1573 | Pfam | ABC transporter | 379 | 528 | IPR003439 | GO:0005524 | |
Gabi3525g00001 | 1573 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 676 | 957 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Gabi3525g00001 | 1573 | MobiDBLite | consensus disorder prediction | 613 | 632 | - | - | |
Gabi3525g00001 | 1573 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 599 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi3525g00001 | Gabi-Chr3525 | 20438 | 54157 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi3525g00001 | 24 | 1236 | Calmodulin-binding Proteins | AT2G36910 | 42.903 | 0.0 | 1003 |