Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3525g00001 ATGGGACAAAACCATGGTGAAGGAAAAAAGATAAGAGATAGTAAGAAAAATAGATGGTCTATTGGGTCCATTTTCATGCATGCTGATGGCCATGATTGGTTTCTTATGGTTTTCGGTATCTTTGGGGCAATTGGTGAAGGCTTGACCACCCCTCTAGCGTTGTATATAAGTAGCCTCATGATGAATAATATTGGGAGTTCATCTTCCATGGAAGGAAACACTTTCATCCATAACATCAATAAGAATTCAGTGGCTTGGTTATGTTTGGCTGGTTGGTCTTTTATTGTTTGCTTCCTCGAGGGTTATTGTTGGACAAGAACAAGTGAAAGACAAGCTGCGAGAATGAGATATAGGTATCTAAAAGCTGTTCTCAGACAAGAAGTTGCATACTTTGATTTGCATGTCACGAGTACATCAGAGATCATCACTAGCGTCTCCAATGACAGCCTCATAATTCAAGATGTTCTTAGTGAGAAGGTACCAAATTTCTTGATGAACTTTTCTACATTCGTTGGGAGTTACATAGCGGCTTTTGCAATGATGTGGAGATTGGCTATTTTGGGGTTTCCTTTTGTGGTTCTTCTATTGATCCCTGGTATAATTTATGGGAAAACTTTGATGGGATTGGGTAGCAAGATCAGAGAAGAGTATAATCAAGCTGGTATAGTAGCAGAACAAACAATATCTTCCATCAGAACCGTTTATTCATTTGTGGGAGAAAACAAGACCATAACTGCTTTCTCTAATGCTCTAAGAGGGACTGTTAAGTTGGGGTTGAAACAAGGCTTAGCTAAAGGTTTAGCCATTGGAAGCAACGGTATTGTTTTCATTATGTGGTCTTTCATGTGCTATTATGGTAGCAGAATGGTCATTTACCATGGCGCTAAAGGAGGAACAGTTTTCGCAGTTGGAGCAGCCATATCTGTTGGTGGATTAGGGTTAGGAGCTTGTTTATCCAATGTGAAGTACTTCTCTGAAGCAAGTTTGGCAGGGGAACGTATAAAGGGAGTGATAAAAAGAGTTCCAAAGATTGATTCTGACAATATGGTTGGGGAGATTCTTGAAAACGTTTCTGGGGAAGTGGAATTTGACCATGTTGAATTTGCTTACCCATCAAGACCAGACAGCATTATCCTTAATGATTTATGCCTTACGATTCCTGCATGCAAGACAGTGGCCTTGGTGGGTGAGAGTGGCTCAGGAAAATCAACTGTTATACAACTTTTGCAGAGATTTTATGACCCACTTGGGGGAGAGATACGTCTTGATGGGGTGGCTATTCATAAGTTGCAGCTCAAGTGGCTTAGGTCACAGATGGGTTTGGTTAGCCAAGAGCCTGCTCTATTTGCAACCAGCATTAAAGAGAACATACTTTTTGGTAAGGAGGATGCCACAGAGGATGAGGTTGTTGAGGCTTCAAAAGCTTCCAATGCTCATAATTTCATTTCACTGCTCCCTCAGGGTTACCATACACAGGTTGGAGAGAGAGGGATTCAAATGTCAGGGGGACAAAAACAGAGGATAGCAATTGCACGAGCAATGATTAAGAAACCTCGAATCCTTCTCCTAGATGAAGCAACCAGTGCACTAGACACCGAGTCTGAACGACTCGTCCAAGAAGCACTCGACAACGCAGCCATGGGTTGCACCGCCATCATCATCGCTCACCGCTTATCCACCATTCAAAACGCCGACGTCATCGCCGTCATGAAACGCGGAAAGGTCATAGAGACAGGTTCACATAACGAACTCATCCAAAACGAAAACGGCCTCTACAACTCCATGGTTCGTCTCCAACAAACACTCAAATTATCCAAAACAGAAGAAACAGAATCCGTTACTCCTCTAACCGTCTCAACCACTTCTACTGTCCCAGACATCCACAACAACAACAATAACAACAACCTTGTAGGCCCCACCAACTCAGTTATTGCAGAAGAGAAGAGAGTTCAAGTGCCATCATTTAAGAGATTGCTTGCACTGAATGCTCCAGAATGGAAGCATGCAGTTATGGGGTGTTTGAATGCGATGCTATTCGGTGCGGTTCAACCTGTTTATGCATTCGTGGTGGGGTCCATGATATTAGTGTATTTTAACACGGATCATGAGGAGATAAAAAATAAGACGAGGGTGTATTCGCTTTGCTTTTTGGGTCTTGCTGTGTTCTCTTTTGTTGTTAATATTGGACAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACCAAACGGGTCAGAGAGGCTATGCTTTATAAGATACTCACTTTTGAAGTTGGGTGGTTTGACCAGGACCAAAATTCAAGCGGTGCTATTTGTTCTAGACTTGCCAAAGATGCTAACGTGGTAAGATCATTAGTGGGAGATAGAATGGCTTTGGTGGTACAAACTTTATCAGCAGTAATAACAGCTTACACTATGGGTCTTGTCATTTCATGGAGACTTAACATTGTCATGATAGCAGTTCAGCCCATTATCATAGCATGCTTTTACATAAGGCGTGTCCTCTTCAAGAGCATGTCCAATAAGGCCATTATAGCCCAAGAACAAAGCAGCAAGTTAGCTGCTGAAGCTGTTTCAAATCTTCGAACCATAACTGCTTTCTCTTCTCAAGACAGAGTCCTCAAAATGCTTGAAAAGGCCCAAGATGGCCCAAGCCAAGAGAGCATTCGACAATCATGGTTCGCAGGTATTGCACTTGCATGTTCTCAATTTCTCACGTTATGTACTTGGGTCCTAAACTATTGGTATGGTGGCAAGCTTATCTCAAATGGGTACATCACAACAAAAGCATTGTTTGAGAGCTTGATGGTTGTTGTGAGCACAGGACGGGTCATTGGAGAGGCTGGAAGCATGACCATTGACCTTGCCAAAGGTGCTGATGTTGTGGGCTCAATTTTTGCAATCCTAGATAGGGACACAAAAATTGAGCCCGATGACCCAAATGGGTACAAGCCTGAGAAGTTAATGGGCCAAATTGAACTCTACGATGTTCATTTTGCATACCCAACTAGGCCTAATGTGATTATCTTCCAAGGCTTCTCAATTAAAATTAAGGCAGGGAAATCAACAGCATTGGTGGGGCAAAGTGGGTCAGGCAAATCAACCATCATAGGGTTAATAGAGAGATTCTATGACCCACTTAAAGGAATAGTGACAATAGATGGTAGAGACATAAAGTCATATAACCTAAAGTGGCTAAGGAAGAACATAGCACTAGTGGGTCAAGAGCCAACCTTGATTGGTGGAACTATTAGAGAGAACATTGCATATGGAGCATGTGATGACAAGATTGATGAGGCTGAGATCATAGAGGCAGCAAGGGCAGCAAATGCTCATGATTTCATAGCTAGCATGAAGGATGGGTATGAGACATGGTGTGGGGACAAAGGAGTACAACTTTCAGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCTATTTTGAAGAATCCCAAGGTGTTGTTGCTGGATGAGGCCACAAGTGCATTAGATAGTCAATCAGAGAAGGTGGTGCAAGATGCATTGGTGAGAGTAATGGTGGAGAGGACCAGTGTTGTGGTGGCACATAGGTTGAGCACCATACACAATTGTGATGTTATTGCTGTCTTAGATAAGGGGAAGGTGGTGGAGATAGGTAACCACTCATCTTTGTTGGCCAAAGGACCAAGGGGAGCTTATTACACTTTGGTAAGTATTCAAACCACACATGCAGCTACAGATGCATATAGAGAGCAAGAATTGCAAAATCCATTGGAAGAAGAAGAAGATGATAACGATCAAAGAAGCTCAAAACCTCTTTGTGGCAATGATAACATTCAAGTTGATGTAAATAATATAAACCTTGATTATATTCCTTCACATGATAATTTGCAATGTGCGTATGATGATTTGAATGATAGCTTGTTGAACTTGAAAAATAGAAATTTGGTTTCAATACAAAGTATTTGCTTCATTGAAAATCAAATTGAATCTTTGAAAAATATATATGATTTTCAAGAAGAGAACATATCCTTGAACTATGAATCCTCAACCATTCTTAAAAATTGCATTGATGTTGATAATCAAGTTGAGGAACTATCATCTAAACTTTCCATAATTGATAATCCTACATGCTCATATTCCATTTTTGAAAATGAAAATAATAATGATACTTTTGTACATGGAAAACCTATAAATGATTGTGGAAATAATAGTTTGGATAATGATAATAGCAAGAAAGCCAAAAATTTGAAAGTTGAGCTTAAAAAGAACAAGTTATCTTGCAAACACATTGTATGTAATTATTGTGGTAAAGTAGGACATATTTCTCATTTGTGCTATCATAGAAGAAATTCTTGTATGAGAAATAAATCGGTTTGGGTTGTCAAAAATTCTATGAATGTTATTCCTAACCCTCAAGGACCCAAGATGAAATGGGTACCAAAAAGTCCTCCTAGCTTTTCCAATGTGCAGAAAATTATTCGAAATGATGGACTAAAAGGTCAAGAGAAAAAGAAATCATCAAGGAAAATGCTTCCTAGGCCTAATGATGGAATTATCAATCAAAGAAGTAATGGAACTTCAGTCAAAGCTTCTCACATGCACAAGATGGAACCCAGAAGGTTCAAAATCCAAAAAGAGAAGCAATGGATAAGAAAAAGTCTCCACTTGATTACAAAGGCCAAGGTATCAAATATCTTTACCTCTTATGCTTATTCATATGCGAATCCAATGAATATGAG 4721 0.4014 MGQNHGEGKKIRDSKKNRWSIGSIFMHADGHDWFLMVFGIFGAIGEGLTTPLALYISSLMMNNIGSSSSMEGNTFIHNINKNSVAWLCLAGWSFIVCFLEGYCWTRTSERQAARMRYRYLKAVLRQEVAYFDLHVTSTSEIITSVSNDSLIIQDVLSEKVPNFLMNFSTFVGSYIAAFAMMWRLAILGFPFVVLLLIPGIIYGKTLMGLGSKIREEYNQAGIVAEQTISSIRTVYSFVGENKTITAFSNALRGTVKLGLKQGLAKGLAIGSNGIVFIMWSFMCYYGSRMVIYHGAKGGTVFAVGAAISVGGLGLGACLSNVKYFSEASLAGERIKGVIKRVPKIDSDNMVGEILENVSGEVEFDHVEFAYPSRPDSIILNDLCLTIPACKTVALVGESGSGKSTVIQLLQRFYDPLGGEIRLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGKEDATEDEVVEASKASNAHNFISLLPQGYHTQVGERGIQMSGGQKQRIAIARAMIKKPRILLLDEATSALDTESERLVQEALDNAAMGCTAIIIAHRLSTIQNADVIAVMKRGKVIETGSHNELIQNENGLYNSMVRLQQTLKLSKTEETESVTPLTVSTTSTVPDIHNNNNNNNLVGPTNSVIAEEKRVQVPSFKRLLALNAPEWKHAVMGCLNAMLFGAVQPVYAFVVGSMILVYFNTDHEEIKNKTRVYSLCFLGLAVFSFVVNIGQHYSFAYMGEYLTKRVREAMLYKILTFEVGWFDQDQNSSGAICSRLAKDANVVRSLVGDRMALVVQTLSAVITAYTMGLVISWRLNIVMIAVQPIIIACFYIRRVLFKSMSNKAIIAQEQSSKLAAEAVSNLRTITAFSSQDRVLKMLEKAQDGPSQESIRQSWFAGIALACSQFLTLCTWVLNYWYGGKLISNGYITTKALFESLMVVVSTGRVIGEAGSMTIDLAKGADVVGSIFAILDRDTKIEPDDPNGYKPEKLMGQIELYDVHFAYPTRPNVIIFQGFSIKIKAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGRDIKSYNLKWLRKNIALVGQEPTLIGGTIRENIAYGACDDKIDEAEIIEAARAANAHDFIASMKDGYETWCGDKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKVVQDALVRVMVERTSVVVAHRLSTIHNCDVIAVLDKGKVVEIGNHSSLLAKGPRGAYYTLVSIQTTHAATDAYREQELQNPLEEEEDDNDQRSSKPLCGNDNIQVDVNNINLDYIPSHDNLQCAYDDLNDSLLNLKNRNLVSIQSICFIENQIESLKNIYDFQEENISLNYESSTILKNCIDVDNQVEELSSKLSIIDNPTCSYSIFENENNNDTFVHGKPINDCGNNSLDNDNSKKAKNLKVELKKNKLSCKHIVCNYCGKVGHISHLCYHRRNSCMRNKSVWVVKNSMNVIPNPQGPKMKWVPKSPPSFSNVQKIIRNDGLKGQEKKKSSRKMLPRPNDGIINQRSNGTSVKASHMHKMEPRRFKIQKEKQWIRKSLHLITKAKVSNIFTSYAYSYANPMNM 1573
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gabi3525g00001 1573 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Gabi3525g00001 1573 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Gabi3525g00001 1573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1230 IPR003439 GO:0005524
Gabi3525g00001 1573 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 975 - -
Gabi3525g00001 1573 FunFam ABC transporter B family member 4 982 1241 - -
Gabi3525g00001 1573 FunFam ABC transporter B family member 4 351 608 - -
Gabi3525g00001 1573 Gene3D - 351 600 IPR027417 -
Gabi3525g00001 1573 MobiDBLite consensus disorder prediction 1491 1505 - -
Gabi3525g00001 1573 FunFam ABC transporter B family member 1 23 358 - -
Gabi3525g00001 1573 SUPERFAMILY ABC transporter transmembrane region 28 342 IPR036640 GO:0005524|GO:0016020
Gabi3525g00001 1573 SUPERFAMILY ABC transporter transmembrane region 653 977 IPR036640 GO:0005524|GO:0016020
Gabi3525g00001 1573 SMART AAA_5 1019 1213 IPR003593 GO:0016887
Gabi3525g00001 1573 SMART AAA_5 388 581 IPR003593 GO:0016887
Gabi3525g00001 1573 Coils Coil 1287 1307 - -
Gabi3525g00001 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1233 IPR027417 -
Gabi3525g00001 1573 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524|GO:0016887
Gabi3525g00001 1573 MobiDBLite consensus disorder prediction 1491 1528 - -
Gabi3525g00001 1573 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Gabi3525g00001 1573 Pfam ABC transporter 1011 1161 IPR003439 GO:0005524
Gabi3525g00001 1573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3525g00001 1573 Pfam ABC transporter transmembrane region 36 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3525g00001 1573 Pfam ABC transporter transmembrane region 672 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3525g00001 1573 CDD ABC_MTABC3_MDL1_MDL2 992 1233 - -
Gabi3525g00001 1573 FunFam Putative ABC transporter B family member 8 638 980 - -
Gabi3525g00001 1573 Gene3D ABC transporter type 1, transmembrane domain 24 958 IPR036640 GO:0005524|GO:0016020
Gabi3525g00001 1573 MobiDBLite consensus disorder prediction 1248 1268 - -
Gabi3525g00001 1573 PANTHER ABC TRANSPORTER B FAMILY 7 721 IPR039421 -
Gabi3525g00001 1573 Gene3D - 982 1244 IPR027417 -
Gabi3525g00001 1573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Gabi3525g00001 1573 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Gabi3525g00001 1573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3525g00001 1573 MobiDBLite consensus disorder prediction 613 632 - -
Gabi3525g00001 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gabi3525g00001 Gabi-Chr3525 20438 54157 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3525g00001 24 1236 Calmodulin-binding Proteins AT2G36910 42.903 0.0 1003