Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3519g00007 ATGGATGTGTTCCTTAGCAATGAGGAAGAGAGTGAGATGAACAGAAGAATATTCCTCATATCCCTTGTTTGCTTATGCGTGGCATTGGTTATCGTCTTCACATTTAGCATCTACATCTTGTTTTGTGTCCTAGCACGCCAATCTCGCTCTAGAGGTTTCATTAACCTACTCAGCCTCACCATGGCTCATAATGTTGATCATCATCATCATCACGCGGAACCAACCAACACAGGTCTTGACCCTGCCCTCATCATGGCACTGCCCACGTTCATAGTCTTGAAGAATATGGAAGCTTATGGTGGCTCTATGATGGAGTGTGCTGTGTGCCTGAGTGCTCTGGAACATGATGAAATAGCCAAGTTGATTCCCAGCTGCAATCACATTTTCCATGTGGGTTGCATTGATTCTTGGTTGGCTTTAAGCTCTACGTGCCCCTTATGTCGAGTCAGGGTCCAACCCTGGCTCAAACCGCAGCTCCATGAGGGTCCTATTGCCCTGGCTCTTGATGGTGCATCCTTGGTTATGCCAGTGTTGGAACCTACAGAAGGGACATCAGATGGTGTTGGTGGCGAGTCACCCAAAATTAGTGGTTTGAATTCTCCATTGAGCTCGTTCCGAAGGATTCTTGGTAGGGAAAGATCGCCAAGAATCCAAGCATATAGCCCTGCTGATGTTGATCAAGATTTGGAGAGACAGTGA 699 0.4692 MDVFLSNEEESEMNRRIFLISLVCLCVALVIVFTFSIYILFCVLARQSRSRGFINLLSLTMAHNVDHHHHHAEPTNTGLDPALIMALPTFIVLKNMEAYGGSMMECAVCLSALEHDEIAKLIPSCNHIFHVGCIDSWLALSSTCPLCRVRVQPWLKPQLHEGPIALALDGASLVMPVLEPTEGTSDGVGGESPKISGLNSPLSSFRRILGRERSPRIQAYSPADVDQDLERQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3519g00007 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 154 IPR013083 -
Gabi3519g00007 232 SMART ring_2 106 147 IPR001841 -
Gabi3519g00007 232 MobiDBLite consensus disorder prediction 179 201 - -
Gabi3519g00007 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 154 - -
Gabi3519g00007 232 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gabi3519g00007 232 MobiDBLite consensus disorder prediction 213 232 - -
Gabi3519g00007 232 Pfam Ring finger domain 105 148 IPR001841 -
Gabi3519g00007 232 SUPERFAMILY RING/U-box 105 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3519g00007 Gabi-Chr3519 101177 101875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3519g00007 4 232 C3H Transcription Factor Family AT2G42360 36.017 7.79e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3519g00007 K19038 - gmx:100783358 198.749