Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3519g00001 ATGGCGGGTCCTTTTCTTCTTCGTTCTCTCTGGTCTTCCGTCAGAAAATCCTTTTCCTCTTCTTCTTCTTCTTCTACTTCCACTTTCGCTCCCTCTCGCTTCTTCTCACGCGCCTTCGCCGCCGCTCCCGCCGCCGCCGCCTCCTCTGCCTCCGCCGCTGCTCCCGGCGGCTCACTCGACCCCAGCCGCCTCCGCAACGTGGCCGTGATCGCTCATGTCGACCACGGCAAGACCACCCTCATGGATCGCCTGCTCCGCCAGTGCGGCGCCGACATCCCACATGAGCGCGCCATGGATTCCATCACCCTCGAACGCGAGCGCGGCATCACCATCGCTTCCAAGGTTACATCTATTCCGTGGAAAGAAAATGAGCTTAACATGGTTGATACTCCTGGACATGCTGATTTTGGTGGTGAGGTTGAACGTGTTGTTGGTATGGTTGAGGGAGCGATTTTGGTTGTTGATGCTGGTGAAGGTCCACTTGCGCAAACAAAATTTGTTCTTGCAAAAGCCTTAAAGTATGGGTTGCGTCCTATTCTTCTTTTAAACAAAGTAGACAGGCCTTCAGTTACTGAGGAGACATGTGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAGGATCCTCCTGATGAGGCCAAAAATATGTCAGAGTTGCTTGATGCCATTGTAACACATGTCCCACCACCAAATGCAAACATTGATGCACCTTTTCAAATGCTGGTTTCAATGATGGAAAAAGACTTCTATCTTGGTCGAATTTTGACTGGGCGCATATATTCTGGGGTTGTTCGTGTTGGTGACAGGGTTCATGGACTACGCAATAAAGATTCTGGTCCTGAAAAGGTTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGTACGAACATGGTTCTTACTGATTGTGCTGGAGCTGGTGATATAATTTCAGTTGCTGGCTTGGCAAGTCCATCAATAGGCCATACGGTGGCAACGGTGGAGGTTATGTCTACATTGCCCACAGTTGAATTGGATCCTCCAACAATTTCCATGACTTTTGGTGTCAATGACTCCCCATTGGCTGGTCGTGATGGTACTCATTTGACTGGGGGAAGAATTGGTGACCGATTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCAGGCTTATCAGAATCATATGAAGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATTTTAATTGAGAACATGAGACGCGAGGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAATAGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGAGGAGCATGTTGGCTTGGTAATGGAGGCCTTGTCTCACAGGCGAGCTGAGGTTACTGACATGGGTCCTGTCTCAGGAACGGTTGGACGAACTAGATTGTGTTTGACTTGTCCATCAAGGGGACTGGTTGGTTACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGATTCATGCATCGTGCTTTCCTGGAGTATGAAAAATTTCGAGGCCCTCTCGGCAATGTTAGGAAAGGAGTACTGGTGTCAATGGGTTATGGTACAATCACAGCTTATGCATTGTTGAGCTTAGAACCTCGTGGGACTCTTTTTGTAACTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGGGATACGGATCTTGATGTCAATCCAGTGAGAGCTAAAGAGCTTACAAATGTGCGTGCTGCTTCCAAGGATGAGAACGTGAAGCTATCTCCGCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCTTCGGATGAGCTTATTGAGACTGGGTTAGAGGATATATGCAATGCTGCTTGA 1968 0.4761 MAGPFLLRSLWSSVRKSFSSSSSSSTSTFAPSRFFSRAFAAAPAAAASSASAAAPGGSLDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVTSIPWKENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEETCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPDEAKNMSELLDAIVTHVPPPNANIDAPFQMLVSMMEKDFYLGRILTGRIYSGVVRVGDRVHGLRNKDSGPEKVEDGKVVKLMKKKGTNMVLTDCAGAGDIISVAGLASPSIGHTVATVEVMSTLPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENSQKLEPIEEVTIEVNEEHVGLVMEALSHRRAEVTDMGPVSGTVGRTRLCLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLEYEKFRGPLGNVRKGVLVSMGYGTITAYALLSLEPRGTLFVTPGMETYDGMIVGEHSRDTDLDVNPVRAKELTNVRAASKDENVKLSPPRLMTLEEAIGYVASDELIETGLEDICNAA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3519g00001 655 Gene3D Elongation Factor G (Translational Gtpase), domain 3 372 646 - -
Gabi3519g00001 655 SUPERFAMILY Translation proteins 209 364 IPR009000 -
Gabi3519g00001 655 Gene3D bipa protein 549 629 IPR042116 -
Gabi3519g00001 655 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 61 233 - -
Gabi3519g00001 655 SUPERFAMILY EF-G C-terminal domain-like 369 452 IPR035647 -
Gabi3519g00001 655 FunFam GTP-binding protein TypA 549 635 - -
Gabi3519g00001 655 CDD BipA_TypA_C 463 543 IPR035651 -
Gabi3519g00001 655 CDD TypA_BipA 64 259 IPR047041 -
Gabi3519g00001 655 FunFam GTP-binding protein TypA 372 480 - -
Gabi3519g00001 655 FunFam GTP-binding protein TypA 63 260 - -
Gabi3519g00001 655 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 99 114 IPR031157 -
Gabi3519g00001 655 NCBIfam small GTP-binding protein domain 65 204 IPR005225 GO:0005525
Gabi3519g00001 655 Gene3D - 62 260 IPR027417 -
Gabi3519g00001 655 FunFam GTP-binding protein TypA 454 548 - -
Gabi3519g00001 655 CDD BipA_III 371 448 IPR047043 -
Gabi3519g00001 655 Pfam Elongation factor G C-terminus 461 544 IPR000640 -
Gabi3519g00001 655 FunFam Elongation factor family protein 261 365 - -
Gabi3519g00001 655 Gene3D Translation factors 261 365 - -
Gabi3519g00001 655 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 260 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 SUPERFAMILY EF-G C-terminal domain-like 463 579 IPR035647 -
Gabi3519g00001 655 CDD BipA_TypA_II 267 364 IPR047042 -
Gabi3519g00001 655 Pfam Elongation factor Tu GTP binding domain 63 257 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 PRINTS GTP-binding elongation factor signature 106 114 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 PRINTS GTP-binding elongation factor signature 142 153 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 PRINTS GTP-binding elongation factor signature 126 136 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 PRINTS GTP-binding elongation factor signature 178 187 IPR000795 GO:0003924|GO:0005525
Gabi3519g00001 655 Pfam Elongation factor Tu domain 2 281 354 IPR004161 GO:0005525
Gabi3519g00001 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 269 IPR027417 -
Gabi3519g00001 655 Gene3D - 454 548 - -
Gabi3519g00001 655 NCBIfam translational GTPase TypA/BipA 64 646 IPR006298 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3519g00001 Gabi-Chr3519 6521 25997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3519g00001 63 187 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 1.81e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3519g00001 K06207 - gmx:100782425 1110.9