Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3517g00003 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTTTCTGAAATTCGCCACCCTCTTTTGAAGACAAGAATATGGCTAGGAACGTTTGAAACGGCAGAAGATGCAGCAAAAGCGTACGATGAAGCAGCGCGACTCATGTGTGGTCCAAAAACACGTACAAATTTCCCATACAATCCCAATGAGTCACAGTCATCTTCATCGAAGCTCCTCTCTGCAACTTTGACTGCCAAGCTACACAAGTGTCACATGGCTTCACTTTCCCTTCAAATGACCAAGCAGAAATCACCACAGGAAGTTCCTCAAGGGGCACATGGATCCAACCCATTTGCCTCAGGCAATGCCATTGCTGAAACAAGCTCAAACACGGGCTTTAGATGGCCAGAGGAGAGACACGACGAACTGCAGTGGCTAGAAGAGAGTTGGGTTGGCGAGGAAGGCCAATTAGTTGAAGTCACAGAACAACAATTTCAGCCAGTTCTTGAAGATGATCATATAGAACAGATGATTCAGGAACTGCTTGATTATGGGTCAATTGAGCTTTGTTCTGTTGCCTCAGATTAA 585 0.4718 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPKTRTNFPYNPNESQSSSSKLLSATLTAKLHKCHMASLSLQMTKQKSPQEVPQGAHGSNPFASGNAIAETSSNTGFRWPEERHDELQWLEESWVGEEGQLVEVTEQQFQPVLEDDHIEQMIQELLDYGSIELCSVASD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3517g00003 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gabi3517g00003 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 MobiDBLite consensus disorder prediction 98 131 - -
Gabi3517g00003 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 122 - -
Gabi3517g00003 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gabi3517g00003 194 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Gabi3517g00003 194 MobiDBLite consensus disorder prediction 98 134 - -
Gabi3517g00003 194 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3517g00003 Gabi-Chr3517 76835 77680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3517g00003 1 191 AP2-EREBP Transcription Factor Family AT5G25190 62.304 4.02e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3517g00003 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3517g00003 - - gmx:100777851 322.013