Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3517g00002 ATGGAGAGTATCCCGGCTGATTTGGCTAAGAAGGGTTTGGAGAAATTGATCGATAAGGCAATAGCAGAATCACGATATATATGTTGCTTCTCTTGCATTGTTGCAGACTTTAAAAAGCAAAAAGGAAAGTTGGAAGCAAAACGAAAGGCTGTGGGGCAACGTGTTGATGCAGCGAAAAGAAACGCACGTGAACCTTTAGCTGATGCCACTTATTGGCGAGAGGAAGTTGGTGAGTCAATTCAAGAGGAAACCGAAACAGAAAAGGCGTGGTTTTTTAGATGGTGTCCTAATTGCATATGGCAGCGATATAGTAAGGGAAAGGCATTGTCCCAAAAGACAGAGGAGATCAAAAAACTCTTGCAAGAAAACTTGGATACTGAAGGAGTCGCTCCTCAACTTCCAGGCGTGGAATACTATTCTTCTGAAGATTACATTTCTTTCAAGGGCAGAGAGTTGAAATACGAAGAACTTTTGAATGCACTGAGAGATGATAATAACTATATAACCGGATTGCAAGGTATGGGCGGCACCGGTAAAACTACATTGGCAAAAGAAGTGGGCAAGCAACTGAAGAGATTGGAAGAATTTCAACAAGTAATCTTTACTACAGTGTCATACACTCCTGACATTAGAAAGATTCAAGATGATATTGCTGTACCCTTGGGATTAGAATTGAAGGATAAGAGCGAATTAGAGCGACGCGGATTACTGTGGAAGAGATTAACCGATGGTGAGAAAAATCTTCTAATATTGGATGACGTGTGGGATCATGAAGATATCAAATTTGAAGAAATAGGGATTCCAGGTAGGGACGATCGCAAGGGTTGTAGAGTTTTTCTAACCACACGCAAGGTAAGGGTATGCAAATTAATGGGAAGTACAAGTATAATTAATCTGGATCTCTTATCAAATGAAGATGCATGGACCCTGTTCATGAAGCATGCTGTTTTAAGCGATAGTACCCCTCAAAGTTTGCTGAATAAGGGACTTAAAATTGTCCTAGAATGCAAAGGACTACCAATTGCAATTTCAGTTCTGGCTAAAAGTTTAAAGGACGAAAAACGGGAGGAAGAGTGGGATGAAGCCATAAATTCCTTGCAGAAGACTATACCCAGGCAGAGTGATGATGATGCTGATGATGCTGATGATGATGATGATGACAGTCATAAGAATCTGGTTAAAGTTTATAATTCTTTGAGGTTTAGCTATGATAGAATGAAGAATAAAAAAGCCAAGAGAATGTTCCTCTTATGTTCTATGTTCCCAGAAGATGAAGAACTTTCTACTGAAATTTTAACCAGATATGTTAGGGTCATTATACTTTTTGGGGAAGTTGGTGAAAAATATGATGGTGCTCGAAGCCAAGTAGTTAAAGCCAAAAATGAACTCATAGATTCTGGTTTATTGTTGAAGGCTGAGAAGGGTCATGTGAAAATGCATGACTTGGTTCGTGAAGTGGCCCTATCGATGGCTAAGAAAGAGATTCTAGCAGTCAATTTGGCTAACAAACGTGAAAAGTTATCGGCTGAAAGTCAGAAGAATATTAAATATTTGTTATGCCAAGGCAAGGACATGGATCTATTTTCCTTTAGGTTTGATGCTTCCAAACTTAAGATTCTAAAAGTTTGTGTGGTTGGAGGAAACTCAATGGAAATGCCAAATTCATTCTTCGAAAATATGACAAATCTTCGAGTTTTGCATTTATCATCTGGGATTTGGGGATGGCGTCTCTCATTGCCACAGTCAATCGAGTCATTGAAGAATATTCGATCTCTATTCCTTGAAAGATTGAAATTAGGTGACATCTCTATTCTGGGAAAACTACACAGCCTTGAGGCTCTTGATTTGGTTGATTGTGTGGTGGTTGAATTGCCACGTGAAATTGCGGAGCTGGAGAGACTTAGATTGCTACACTTGTATAGGTGTCTTACTGGTACGAATAATGCATTAGAAGTGATTGAAAGACACTTATCACTTGAAGAATTGTATTTCATTCAATTCAAGGTTTACAGCTCAGCGAATGATAAGAAAATAACATTGCCTGAATTGCAAAGGTATCATATAACAGAGAGGTATACTGACGGAGCAAATGATTCAATGCCAAAATATGTGTGTGCTTCATACATTGATGGTTATTTCTCTGAAGCAACATTCAAGTATCTGGTACAAACAACAGAGATTCTTAAGCTAGAAGGAATTATGGGGGAGTGGAAAAATCTCATACCTGAGATTGTTCCGATAGATGAAGGTATGAATTATCTTGTGAAGCTTCGTTTAGAATCTTGGTCAGAATTACAGTGTCTAATTGACACTAGTCATATTAATTCTCTGGAACAAAATGTCTTCTCCAAGTTGGTTGTACTAGAACTTGAAAAGATGGAAAACTTGGAAGAACTATGCATTGGTCCCCTTCCCTCTGACTTTCTCAAGTGTTTAGAGACGTTATTCATCAAACGTTGTTATGTTTTGCGAAGCATATTGTTTAAGGGAAAGCTAAACCTTTCCAATCTTAAAATCATCAAACTGATTTATTGCCCGAAGTTGGTAAACCTATTTCAACTATCGACATCTCAAAGCCTAGTTCTGTTGGAGGAATTGGAGATAAGTTTCTGTGAACAACTGGAAAACATAATAGCAGGTGAAAGAATAGGGGAGGAATTGGGAGAAATAGTTGGTGCTGATAATGATAACAACAGAAGAAAGAGTTACACCGCAATGTTTCCGAATTTGAAAATGCTTTTTATTGCACATTGTCCCCGATTGGAATTCATATTTTCGAGCCTTTCTGCTCGAGATGTTCCTGTAATAGAATCTATCGATATTGGGCATTGTGGTGAGCTTAAATACATATTTGGCAAATACCAACATGAAAATGAAGAGGCATCGAATCATCTTGGGAAAAGTACTCAATGTCTTTCAAAACAATCACAAATGCTGCACAATATTAAAGAGATTCAACTTTATCGTGTTTCCAAGATAGAATCCGTATTTATCATGTCTATTACTCCAACAATGATGTTGGAAACATTGATAATTAGGGAATGTGATGAATTGAAGCACGTAATAATAGATACCAAAGATGACCGAGGTGGCAATAACTGGGGCGACGTGTTTCCGAAATTGGAAAAGCTCTTGGTGAAGGAATGTGGGCAATTGGAGTATATATTTGAGATTCAACTTCAAAATCACAATGAGATTCAGATTCTTCTTCCAGCATTAAAATATCTCGAATTTCACAAGCTGCCAAACTTAATCGGCATTTGCTCTGAAAACTATCGCATAACCTTCCCACTTTTGACGGAGTTTACACTCAGTGAATGCTACCAGTTTAGCATTAAATCTATTGGTGAATTGTCCGTTCATGATTCAAGAGAATTAGGTACCACAACCATCAAGGTACCCACCCCTCTTTCCATATATCTTTGTTGTTTGTAG 3435 0.3808 MESIPADLAKKGLEKLIDKAIAESRYICCFSCIVADFKKQKGKLEAKRKAVGQRVDAAKRNAREPLADATYWREEVGESIQEETETEKAWFFRWCPNCIWQRYSKGKALSQKTEEIKKLLQENLDTEGVAPQLPGVEYYSSEDYISFKGRELKYEELLNALRDDNNYITGLQGMGGTGKTTLAKEVGKQLKRLEEFQQVIFTTVSYTPDIRKIQDDIAVPLGLELKDKSELERRGLLWKRLTDGEKNLLILDDVWDHEDIKFEEIGIPGRDDRKGCRVFLTTRKVRVCKLMGSTSIINLDLLSNEDAWTLFMKHAVLSDSTPQSLLNKGLKIVLECKGLPIAISVLAKSLKDEKREEEWDEAINSLQKTIPRQSDDDADDADDDDDDSHKNLVKVYNSLRFSYDRMKNKKAKRMFLLCSMFPEDEELSTEILTRYVRVIILFGEVGEKYDGARSQVVKAKNELIDSGLLLKAEKGHVKMHDLVREVALSMAKKEILAVNLANKREKLSAESQKNIKYLLCQGKDMDLFSFRFDASKLKILKVCVVGGNSMEMPNSFFENMTNLRVLHLSSGIWGWRLSLPQSIESLKNIRSLFLERLKLGDISILGKLHSLEALDLVDCVVVELPREIAELERLRLLHLYRCLTGTNNALEVIERHLSLEELYFIQFKVYSSANDKKITLPELQRYHITERYTDGANDSMPKYVCASYIDGYFSEATFKYLVQTTEILKLEGIMGEWKNLIPEIVPIDEGMNYLVKLRLESWSELQCLIDTSHINSLEQNVFSKLVVLELEKMENLEELCIGPLPSDFLKCLETLFIKRCYVLRSILFKGKLNLSNLKIIKLIYCPKLVNLFQLSTSQSLVLLEELEISFCEQLENIIAGERIGEELGEIVGADNDNNRRKSYTAMFPNLKMLFIAHCPRLEFIFSSLSARDVPVIESIDIGHCGELKYIFGKYQHENEEASNHLGKSTQCLSKQSQMLHNIKEIQLYRVSKIESVFIMSITPTMMLETLIIRECDELKHVIIDTKDDRGGNNWGDVFPKLEKLLVKECGQLEYIFEIQLQNHNEIQILLPALKYLEFHKLPNLIGICSENYRITFPLLTEFTLSECYQFSIKSIGELSVHDSRELGTTTIKVPTPLSIYLCCL 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3517g00002 1144 Gene3D - 139 298 IPR027417 -
Gabi3517g00002 1144 Gene3D - 301 378 IPR042197 -
Gabi3517g00002 1144 Gene3D Ribonuclease Inhibitor 832 960 IPR032675 -
Gabi3517g00002 1144 PRINTS Disease resistance protein signature 832 848 - -
Gabi3517g00002 1144 PRINTS Disease resistance protein signature 168 183 - -
Gabi3517g00002 1144 PRINTS Disease resistance protein signature 336 350 - -
Gabi3517g00002 1144 PRINTS Disease resistance protein signature 241 255 - -
Gabi3517g00002 1144 Coils Coil 490 510 - -
Gabi3517g00002 1144 SUPERFAMILY RNI-like 905 1111 - -
Gabi3517g00002 1144 Gene3D - 397 487 IPR036388 -
Gabi3517g00002 1144 FunFam Probable disease resistance protein At1g61300 133 295 - -
Gabi3517g00002 1144 Pfam NB-ARC domain 154 369 IPR002182 GO:0043531
Gabi3517g00002 1144 SUPERFAMILY L domain-like 476 945 - -
Gabi3517g00002 1144 MobiDBLite consensus disorder prediction 370 389 - -
Gabi3517g00002 1144 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 35 951 - -
Gabi3517g00002 1144 Gene3D Ribonuclease Inhibitor 488 689 IPR032675 -
Gabi3517g00002 1144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3517g00002 Gabi-Chr3517 52349 59134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3517g00002 169 642 WRKY Transcription Factor Family AT5G45050 22.963 7.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3517g00002 - - aprc:113851230 973.77