Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3514g00001 ATGGGTGTCGAGAATAGTGAAGAGAAAAATTATGATGAAGCAACCACATCAGGGAATCGTGCAGAAACCAGCACAAACGGGGAAAAGGAAGAAAAGATCAAACAAAAACAAAAACCTGATACAGTTCCATTTCACAAGCTGTTCTCTTTTGCAGACTCCACTGATATTCTGTTAATGACCGTTGGAACCGTTGGTGCCATTGGAACTGGTTTGAGCAGGCCTCTCATGACATTACTTTTCGGTCAAATGATTGATAGATTCGGAAGTAACCAGCAAAACACCGACATAGTGAAAGAAGTATCCAAGGTCTCCCTGAAATTTATGTACTTAGCAGTAGGATCAGGGGTGGCAGCATTCCTCCAGGTGGCTTGTTGGATGGTAACGGGGGAAAGACAGGCTGCACGAATAAGGGGGTTGTATTTGAAAACTATATTAAGACAAGATGTTGCTTTCTTTGATAAGGAAACAAACACCGGAGAAGTTATAGGGAGAATGTCAGGTGACACGGTTCTCATACAAGACGCCATGGGTGAGAAGGTTGGGCAATTTCTGCAGCTGATAGCAACATTCTTTGGGGGCTTTGTGATAGCATTTGTCAAAGGGTGGCTTCTTACAGTTGTCATGTTGTCCACTCTTCCTGTTCTTGTTTTGTCAGGTGCTGCTATGGCCGTCATGATGGGCAAGATGGCTTCCCTAGGTCAAACTGCTTATGCAAAAGCTGCACACGTAGTTGAACAGACTATTGGCTCAATAAGAACCGTTGCATCCTTTACTGGGGAGAAGCAAGCAATATCTAGTTATAGCAAATTTCTAGTAGATGCTTACAAATCAGGAGTTCATCAAGGTTTCTTAGCTGGACTTGGCTTTGGCACAGTTATGTCTGTTGTTTTCTGTGGTTATGCTTTGGCTGTATGGTTTGGCGCGAAGATGATAATGGAAAAAGGATATAATGGGGGCACGGTGATTAATGTGATTATTGCTGTGTTAACTGCTTCTATGTCTCTTGGCCAGGCATCCCCTAGCATGACTGCATTTGCTGCGGGTCAGGCTGCAGCTTACAAAATGTTTGAGACAATTGAGAGGAAGCCAGGGATAGATGCTTATGATCCAAATGGAAAAGTATTAGAGGATATTCAAGGTGAAATAGAGTTAAGGGATGTTTATTTCAGTTATCCAGCCAGACCTGAGGAGCTAATATTCAATGGATTCTCTCTTCATATACCTAGCGGTGCAACTGCAGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCTACGGTTATCAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAAGAGTTTCAGCTAAGGTGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAACCGGTGTTGTTTGCATCTAGCATTGAGGATAATATTGCATATGGAAAGGAGGGAGCCACAATTGAAGAAATAAGATCTGCATCCAAACTTGCAAATGCTGCTGAATTCATTGATAAACTGCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGCTTTCTGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCAAGAATTCTACTCTTGGATGAAGCTACAAGTGCACTTGATGCAGAGTCTGAAAGAGTAGTGCAAGAGGCTCTAGACAGGATCATGGTGAGCAGAACTACTGTTGTTGTGGCACATCGCTTGAGCACAGTGAGGAATGCTGATATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCAGAATTGCTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGCTTACAAGTAAACAAGGAATCAGAAGAAACTGCAGATCATCATAACAAGATTGAACTTTCCGTAGAATCATTTAGACAATCGAGTCAAAAGAGGTCACTTCAAAGATCTATTAGTCGAGGTTCATCTGCAGGGAATAGTAGCCGCCACTCATTTTCAGTTTCGTTTGGTTTACCCACAGGAGTTAACGTCCTTGATCCTGAACATGAAAACTTACAACACAATGAAAAGGCACCAGAGATTCCACTCCGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAATTCTTCTGATTGGATCTCTAGCTGCCATAGGAAATGGTGTTATACTTCCAATATTTGGATTATTGACTTCCAGTGTTATCAAAACATTTTACGAACCATTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCAGCGATGTTTACGATCCTTGGTCTTGCAACATTACTGGTGAATCCAGCCCGATCATACTTTTTTTCTGTAGCTGGATGTAAGTTAATCGAACGTATCAGGCTAATATGTTTCGAGAAAGTGGTCAACATGGAGATTGGTTGGTTTGATAAGCCTGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGAAGATGCTGCATCCGTGCGTGCCCTTGTTGGTGATACGTTGGGACTACTAGTTCAAAATTTAGCATGTGCCTTGGCAGGTTTGATTATTGCTTTTATTGCAAGCTGGGAGCTGGCTTTAATTATTCTTGTCTTAATTCCCTTGATTGGAGTAAATGGATATGTTCAAATGAAATTCATGAAGGGGTTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAACGATGCAGTTGGAAGCATAAGAACGGTGTCTTCTTTCTGTGCTGAAGATAAGGTTATGGAACTATACAAGAAGAAATGTGAAGGCCCCATGAAAACAGGGATACGACAAGGGTTGACTAGTGGATCAGGATTTGGGGTTTCATCTTTCTTACTGTTTAGTGTCTACGCAACCAGTTTCTATGCAGGAGCTAGACTTGTACAGGCTGGGAAGGCTACATTCTCAGATGTTTTTCGGGTTTTCTTTGCGTTAACTACGGCAGCTGTTGGGGTTTCCGTATCAAGCTCCTTTCATCCTGACGCTAGCAAAGCCAAGACAGCTACTGCTTCCATATTTCGAATAATTGATAAGAAGTCAAAGATAAATCCGAGTGATGAGTGTGGAACAACACTAGACAGCGTTAAGGGAGAAATTGAGCTTCGTCATGTTGGCTTCAATTATCCATCTAGGCCTGATATACAGATTTTCCGAGACCTAAACTTGGCTATCCATTCTGGCAAGACTGTGGCACTTGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGGATAGAAATTCGGGAGTTACAGCTCAAGTGGTTAAGACAGCAAATGGGGCTTGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATCCGTGCCAATATTGCTTATGGAAAAGGAGGGGATGCAACTGAAGCTGAAATCACAGCTGCAGCAGAACTGGCCAATGCCCATGAGTTCATTAGTGGTTTACAACAGGGTTATGATACTGTAGTGGGAGAGAGGGGAACCCAATTATCTGGTGGGCAGAAGCAACGGGTAGCCATTGCACGTGCTATAATTAAAAGTCCAAAGATATTGCTACTAGATGAAGCCACAAGTGCATTAGATGCCGAGTCAGAGAGAGTTGTTCAAGATGCATTAGACAGAGTCATGGTGAATAGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCTGTTGTGAAAAATGGTGTTATAGTGGAGAAAGGAAGGCATGAAACGCTCATTAACATCAAGGATGGATTTTATGCTTCCTTAATCCAACTTCACACAACTGCTTCAACTGTTTGA 3846 0.4269 MGVENSEEKNYDEATTSGNRAETSTNGEKEEKIKQKQKPDTVPFHKLFSFADSTDILLMTVGTVGAIGTGLSRPLMTLLFGQMIDRFGSNQQNTDIVKEVSKVSLKFMYLAVGSGVAAFLQVACWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFLQLIATFFGGFVIAFVKGWLLTVVMLSTLPVLVLSGAAMAVMMGKMASLGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAISSYSKFLVDAYKSGVHQGFLAGLGFGTVMSVVFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMTAFAAGQAAAYKMFETIERKPGIDAYDPNGKVLEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGATAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIEDNIAYGKEGATIEEIRSASKLANAAEFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVSRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQVNKESEETADHHNKIELSVESFRQSSQKRSLQRSISRGSSAGNSSRHSFSVSFGLPTGVNVLDPEHENLQHNEKAPEIPLRRLASLNKPEIPILLIGSLAAIGNGVILPIFGLLTSSVIKTFYEPFDEMKKDSKFWAAMFTILGLATLLVNPARSYFFSVAGCKLIERIRLICFEKVVNMEIGWFDKPENSSGAIGARLSEDAASVRALVGDTLGLLVQNLACALAGLIIAFIASWELALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVSSFCAEDKVMELYKKKCEGPMKTGIRQGLTSGSGFGVSSFLLFSVYATSFYAGARLVQAGKATFSDVFRVFFALTTAAVGVSVSSSFHPDASKAKTATASIFRIIDKKSKINPSDECGTTLDSVKGEIELRHVGFNYPSRPDIQIFRDLNLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRELQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEITAAAELANAHEFISGLQQGYDTVVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINIKDGFYASLIQLHTTASTV 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3514g00001 1281 Gene3D - 380 633 IPR027417 -
Gabi3514g00001 1281 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3514g00001 1281 Gene3D ABC transporter type 1, transmembrane domain 105 1010 IPR036640 GO:0005524|GO:0016020
Gabi3514g00001 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
Gabi3514g00001 1281 SUPERFAMILY ABC transporter transmembrane region 40 366 IPR036640 GO:0005524|GO:0016020
Gabi3514g00001 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Gabi3514g00001 1281 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Gabi3514g00001 1281 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Gabi3514g00001 1281 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524|GO:0016887
Gabi3514g00001 1281 MobiDBLite consensus disorder prediction 648 668 - -
Gabi3514g00001 1281 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 343 - -
Gabi3514g00001 1281 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524|GO:0016887
Gabi3514g00001 1281 MobiDBLite consensus disorder prediction 1 38 - -
Gabi3514g00001 1281 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Gabi3514g00001 1281 FunFam ABC transporter B family member 1 1026 1276 - -
Gabi3514g00001 1281 PANTHER ABC TRANSPORTER B FAMILY 24 619 IPR039421 -
Gabi3514g00001 1281 MobiDBLite consensus disorder prediction 24 38 - -
Gabi3514g00001 1281 SMART AAA_5 409 581 IPR003593 GO:0016887
Gabi3514g00001 1281 SMART AAA_5 1063 1256 IPR003593 GO:0016887
Gabi3514g00001 1281 FunFam ABC transporter B family member 1 372 621 - -
Gabi3514g00001 1281 SUPERFAMILY ABC transporter transmembrane region 696 1015 IPR036640 GO:0005524|GO:0016020
Gabi3514g00001 1281 FunFam ABC transporter B family member 1 694 1002 - -
Gabi3514g00001 1281 Pfam ABC transporter transmembrane region 714 986 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3514g00001 1281 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3514g00001 1281 FunFam ABC transporter B family member 9 46 378 - -
Gabi3514g00001 1281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1274 IPR027417 -
Gabi3514g00001 1281 Pfam ABC transporter 1055 1204 IPR003439 GO:0005524
Gabi3514g00001 1281 Gene3D - 1026 1280 IPR027417 -
Gabi3514g00001 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3514g00001 1281 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Gabi3514g00001 1281 CDD ABC_MTABC3_MDL1_MDL2 1036 1274 - -
Gabi3514g00001 1281 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 986 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3514g00001 Gabi-Chr3514 17607 28202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3514g00001 42 1280 Calmodulin-binding Proteins AT2G36910 45.200 0.0 1058