Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3512g00005 ATGGCTGAGTTTTTGAGGCAATTGCCAATGTCAATGCCGAGGCAGGCCTTGAACAACCACAACCACCACCAAATGCCGAGGCAAGCTTCCCTCACAAACCATCACTATCATCACTACCATCTTCACCATGTTCTGCATGTTCTCCTCTTTACACTTCTTGCTTCACCTCTTTCCTTTGCTTCCAATGATGAAGTTGGTGCTTTGCTTTCATGGATGCATAGCTCCTCCGAAGTTCCTTCAGCTTTTTCTAACTGGAACCCTTTGGACTCTACTCCTTGCAAATGGTCATACATCAAATGCTCTTCAGAAAGCCTTGTTACTGAGATAAACATTCAAGGAGTTGAGTTAGCCCTTCCTTTTCCTTCCAATATCTCTTCCTTTCCCTTCCTTCAAAAGCTTGTCATTTCTGGAACTAACCTCTCTGGGGCTATCTCACCTGACATTGGGAATTGCAATGAGCTTACAATCATTGACCTTAGCTCAAATAGTCTTGAGGGTAACATTCCTTCAAGTATAGGGAAGCTCAAAAAGCTCCAAGACTTGAGCTTGAACTCTAACCAGCTAACTGGTCCAATTCCAAGGGAACTTGGTGATTGTGCTAATCTTAAGAACCTTGACATTTTTGACAACAACCTTAGTGGGGATCTTCCTGTTGAGCTGGGAAAGCTTTCAAATCTGGAGGTTGTAAGAGCAGGAGGAAACAAGGGTATTGTGGGGAAGATTCCAGATGAGCTTGGGGATTGTAGGAATTTGACAGTGTTGGGTCTTGCTGATACTAAAATTTCTGGTTCAATGCCTGCATCACTGGGTAAGCTAAGCATGCTTCAGACCATGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGCAACTGTTCAGAGCTTGTGAATTTGTTTTTGTATGAGAATGATCTATCTGGTTCACTGCCAAAAGAGCTAGGTAAGCTTCAGAAGCTGGAAAAGATGCTGTTGTGGCAAAACAATTTTGCTGGTAGTATACCTGAGGAGATTGGCAACTGCAGGAGCTTGAAGATTTTTGATGCCTCCTTAAATTCTTTGTTTGGTAGAATACCTCAAAGTTTGGGGCAACTCTCAAATCTTGAAGAGCTTATGCTAAGTAACAATAACATATCTGGTTCAATACCACCTGCTCTTTCCAATCTTACTAACCTTGTGCAGTTACAGTTAGATACAAATCAGCTATCAGGTTCAATTCCACCTGAGCTTGGAAGGTTGACAAAGCTAACAGTCTTTTTTGCATGGCAGAACAAACTTGAAGGTGGCATTCCATCAGCAATGGGAGGTTGTAGAAGCCTTGAGGCTCTTGATTTGTCATACAATGCACTCACTGATAGCTTACCCTCAGACCTGTTTAAGCTTCAAAATTTAACAAAGCTTCTACTAATCTCTAATGATATTTCTGGCCCCATTCCTCCTGAGATTGGTAACTGCAGTTCTCTAATTAGACTACGGCTTGTAAACAACAGAATCAATGGGGAGATACCAAGAGAAATTGGTTTCCTCAATAACCTTAGTTTCCTTGATCTGTCTGAAAATCATCTTAGTGGGTCACTACCACTTGAGATTGGAAACTGTAAAGAGCTGCAAATGCTGAATCTAAGCAATAACTCCCTTTCTGGTGTTTTGCCTAGTTATTTATCTTCTCTTACAAGGCTAGAGGTCTTGGATGTTTCTCTCAATAACTTTTCTGGTGTGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCTGCATCAATTCCCTCCTCACTTGGGAAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACATATTCTCAGGGAGCATCCCACCAGAACTGTTTCAAATTGAAGCACTTGATATTGCTCTAAATTTGAGTCATAATGCATTATCTGGGGTAATCCCACCAGAGGTTTCTGCTTTGAACAAGCTGTCTGTTCTAGACCTTTCATACAACATGCTTGAAGGTGACTTGATGGTATTTTCAGGGCTTGAAAATCTTGTTTCTCTAAATGTTTCCTACAACAAATTCACTGGTTATCTACCAGACACCAAGTTATTCCATCAACTATCAGCAACAGATTTGGCAGGAAATCAAGGTTTGTGTCCTAATGGCCATGATGCATGTTTTGTTAGCAATGCTGCAATGACAAAAATGCTAAATGAAACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGACTATTGCTATGTCAATCTTTGGAGTTGTTACGGTTTTTCGAGCAAGGAAAATGATTCGAGATGACAATGATTCTGAGATGGGAAAAGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAACTTCTGTGTGGAGCAAGTTTTAAAGTGTTTGGTGGAATCAAATGTGATTGGAAAGGGGTGTTCAGGGATAGTTTATCGCGCCGAAATGGAAAATGGAGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACAATAGCTGCAAGATATGGTAGTCAAAATGACAATCAAAATGAGAAATTAGCAGTTAATGGAGGAGTTCGTGATTCATTTTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTATATGCCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGCAACTGCTTGGAATGGGACATCAGATTTCGAATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCCTTCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCACGATCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCAGAGTATGGTTATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGATGGACTCCATATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGCTTGATGAAAGCTTAAGAGCTAGGCCAGAATCTGAAATTGAGGAAATGTTGCAGACCTTAGGTGTGGCTTTGCTTTGTGTAAACTCAAGCCCAGATGACAGGCCAACCATGAAAGATGTTGTAGCAATGATGAAAGAAATTAAGCAGGAAAGAGAGGAATATATGAAAGTTGACATGCCTCTTGATGGATCTTCTGTAAATCATCAACAAGAAAGTAATCATTTTGGTGAAGAAAATGGCAAAGATGAAACATGCATGCCCAATAAGCAGCAGCAGCACTAA 3441 0.4069 MAEFLRQLPMSMPRQALNNHNHHQMPRQASLTNHHYHHYHLHHVLHVLLFTLLASPLSFASNDEVGALLSWMHSSSEVPSAFSNWNPLDSTPCKWSYIKCSSESLVTEINIQGVELALPFPSNISSFPFLQKLVISGTNLSGAISPDIGNCNELTIIDLSSNSLEGNIPSSIGKLKKLQDLSLNSNQLTGPIPRELGDCANLKNLDIFDNNLSGDLPVELGKLSNLEVVRAGGNKGIVGKIPDELGDCRNLTVLGLADTKISGSMPASLGKLSMLQTMSIYSTMLSGEIPPEIGNCSELVNLFLYENDLSGSLPKELGKLQKLEKMLLWQNNFAGSIPEEIGNCRSLKIFDASLNSLFGRIPQSLGQLSNLEELMLSNNNISGSIPPALSNLTNLVQLQLDTNQLSGSIPPELGRLTKLTVFFAWQNKLEGGIPSAMGGCRSLEALDLSYNALTDSLPSDLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVNNRINGEIPREIGFLNNLSFLDLSENHLSGSLPLEIGNCKELQMLNLSNNSLSGVLPSYLSSLTRLEVLDVSLNNFSGVVPMSIGQLTSLLRVILSKNSFSASIPSSLGKCSGLQLLDLSSNIFSGSIPPELFQIEALDIALNLSHNALSGVIPPEVSALNKLSVLDLSYNMLEGDLMVFSGLENLVSLNVSYNKFTGYLPDTKLFHQLSATDLAGNQGLCPNGHDACFVSNAAMTKMLNETNSKRSEIIKLAIGLLSALTIAMSIFGVVTVFRARKMIRDDNDSEMGKDSWPWQFTPFQKVNFCVEQVLKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTIAARYGSQNDNQNEKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAPSIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIKQEREEYMKVDMPLDGSSVNHQQESNHFGEENGKDETCMPNKQQQH 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3512g00005 1146 Gene3D Phosphorylase Kinase; domain 1 797 904 - -
Gabi3512g00005 1146 SUPERFAMILY Protein kinase-like (PK-like) 794 1097 IPR011009 -
Gabi3512g00005 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 442 729 - -
Gabi3512g00005 1146 Pfam Leucine rich repeat 639 693 IPR001611 GO:0005515
Gabi3512g00005 1146 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Gabi3512g00005 1146 SMART LRR_sd22_2 416 448 - -
Gabi3512g00005 1146 SMART LRR_sd22_2 368 394 - -
Gabi3512g00005 1146 SMART LRR_sd22_2 657 682 - -
Gabi3512g00005 1146 SMART LRR_sd22_2 175 207 - -
Gabi3512g00005 1146 PRINTS Leucine-rich repeat signature 515 528 - -
Gabi3512g00005 1146 PRINTS Leucine-rich repeat signature 657 670 - -
Gabi3512g00005 1146 SUPERFAMILY RNI-like 133 478 - -
Gabi3512g00005 1146 SUPERFAMILY L domain-like 457 719 - -
Gabi3512g00005 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 949 961 IPR008271 GO:0004672|GO:0006468
Gabi3512g00005 1146 MobiDBLite consensus disorder prediction 1112 1146 - -
Gabi3512g00005 1146 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Gabi3512g00005 1146 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 793 904 - -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 360 457 IPR032675 -
Gabi3512g00005 1146 ProSitePatterns Protein kinases ATP-binding region signature. 816 838 IPR017441 GO:0005524
Gabi3512g00005 1146 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 330 1096 - -
Gabi3512g00005 1146 ProSiteProfiles Protein kinase domain profile. 810 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3512g00005 1146 Pfam Leucine Rich Repeat 370 392 IPR001611 GO:0005515
Gabi3512g00005 1146 Pfam Protein tyrosine and serine/threonine kinase 813 1095 IPR001245 GO:0004672|GO:0006468
Gabi3512g00005 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 316 424 - -
Gabi3512g00005 1146 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 905 1115 - -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 63 177 IPR032675 -
Gabi3512g00005 1146 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 61 217 - -
Gabi3512g00005 1146 Gene3D Transferase(Phosphotransferase) domain 1 905 1120 - -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 181 265 IPR032675 -
Gabi3512g00005 1146 FunFam Predicted protein 218 315 - -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 553 637 IPR032675 -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 266 359 IPR032675 -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 638 725 IPR032675 -
Gabi3512g00005 1146 Gene3D Ribonuclease Inhibitor 458 552 IPR032675 -
Gabi3512g00005 1146 SMART serkin_6 810 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3512g00005 1146 SMART LRR_typ_2 680 705 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 175 199 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 392 416 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 584 608 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 440 464 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 512 536 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 320 344 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 560 583 IPR003591 -
Gabi3512g00005 1146 SMART LRR_typ_2 368 391 IPR003591 -
Gabi3512g00005 1146 Pfam Leucine rich repeat N-terminal domain 62 101 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3512g00005 Gabi-Chr3512 90612 94358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3512g00005 59 1112 Receptor kinase-like Gene Family AT5G56040 46.723 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3512g00005 PK_Tyr_Ser-Thr 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3512g00005 - - gmx:100794698 1907.88