Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3512g00004 ATGAGAAACACAAGATTGCTTATGTATGATTATATGCCAAATGGGAGTCTCGGAAGTCTACTTCATGAACGAAGTGGCAACTGCTTGGAATGGGACATCAGATTTCGAATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTACACCATGATTGTGCTCATCCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTCGCACGATCTTCTAGTACACTAGCTGGTTCCTATGGTTACATAGCTCCAGAGTATGGTTATATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGATGGACTCCATATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGCTTGATGAAAGCTTAAGAGCTAGGCCAGAATCTGAAATTGAGGAAATGTTGCAGACCTTAGGTGTGGCTTTGCTTTGTGTAAACTCAAGCCCAGATGACAGGCCAACCATGAAAGATGTTGTAGCAATGATGAAAGAAATTAAGCAGGAAAGAGAGGAATATATGAAAGTTGACATTCCTCTTGATGGATCTTCTGTAAATCATCAACAAGAAAGTAATCATTTTGGTGAAGAAAATGGCAAAGATGAAACATGCATGCCCAATAAGCAGCAGCAGCACTAA 762 0.3963 MRNTRLLMYDYMPNGSLGSLLHERSGNCLEWDIRFRIILGAAQGLAYLHHDCAHPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIKQEREEYMKVDIPLDGSSVNHQQESNHFGEENGKDETCMPNKQQQH 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3512g00004 253 MobiDBLite consensus disorder prediction 220 253 - -
Gabi3512g00004 253 SMART serkin_6 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3512g00004 253 SUPERFAMILY Protein kinase-like (PK-like) 4 204 IPR011009 -
Gabi3512g00004 253 PIRSF ILK 2 218 - -
Gabi3512g00004 253 Gene3D Transferase(Phosphotransferase) domain 1 12 227 - -
Gabi3512g00004 253 Pfam Protein tyrosine and serine/threonine kinase 5 202 IPR001245 GO:0004672|GO:0006468
Gabi3512g00004 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Gabi3512g00004 253 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3512g00004 253 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 12 222 - -
Gabi3512g00004 253 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3512g00004 Gabi-Chr3512 77872 79497 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3512g00004 2 209 Receptor kinase-like Gene Family AT5G56040 56.306 1.45e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3512g00004 PK_Tyr_Ser-Thr 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3512g00004 - - gmx:100815339 444.121