Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3512g00001 ATGGACTGTGAAGTTGAATTGCAAGGGGGAGATCTACATGCAGGTGTGGTAACTGAGACAAACCCTGTTGGTTTTGGCATCATGGATGATGCAGAAACGTTAGCCGTTGCTGAGAGAGAGATGTGGCTTAACAGTGACCAAGATGATCTTCTTGGTGTGAATGATACTTCCATGTTCTATGCTGATTTCCCTCCTTTACCTGATTTTCCATGCATGTCATCATCTTCTTCCTCATCCTCAACTCCAGCACTTCCAGTGAATAACATAACATACTCCACCACCACTTCCTCCTCCTCCTCTTCCTCCTCGGCGTCGTCGTCTTCCGCCGCGTCATGGGCGGTTTTGAGGTCTGATGTTGACATAGAGGAAGATGCCGAGAAAAACAACATCAACATCATCAATAACAACAACTACAACAGTTACATGCAGCAGAATAATGATCCACTAGATGCAACAACAACTCCTGCAGCGTTATCATCCACTGCATCCATGGAGATTTCTCAACAACATCTTGATCCTGGTCTTGGTGCTAACACTGTTGGAGATTGCATGGATGATGTGATGGACACTTTTGGTTACATGGAGCTTTTAGAGTCCAATGATTTCTTTGACCCTTCATCTATTTTCCAGAGTGAAGAAAACCCTTTACCAGAATTTACCCAATTGCCACAGCTAGATGAACATGCAATGGGAATACATCACAGGGAATCTACCCAGCAACAAGGGGAAGAGGAGGATCATCATCATAATCATCATCAGCTTCTTGTGTGCAACAATAATGGGGAAGAGATCCAAGGAGAGGAAGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGTGATGAAATGAGCATGGTTTTCTTGGAGTGGCTTAAATCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGGAGTGTGAAGCTGAAGAAAGCCACAATAGAAAGTGCTGCAAGGCGTTTGGGTGGTGGCAAAGAAGCCATGAAGCAATTGTTGAAGCTTATTCTTGAATGGGTCCAAACAAGCCATCTTCAGAATAAAAGGCGCAAGGAGAATAACAATAACAATAACAATATCAATTCACAGTCAAATCTCCTCCCACAATTTCAGGATCCAAGTCAAAACCAAAACACAAACACTAGTTCATTTGCACCAGAATCAAACGCTTGTTTCAACCAAACAACACCCTGGCTTTCATCACCACAACCTTTTGGGACAGATCAAGCTCCTCTCATGGTTTCTCAAATGCCTTTTTCACAACCCATGGTTGGGTATGTGGGTGACCCTTACACAAACGGTGCTACTTCAAATAACATGAATAGTGGTGGGGGTACCCAAACCCAAAACAATAACCCTTACCAAACTTCTCCTGAATATCACATGCTGGAATCAGCAAATTCATGGCCTCCATCTCAGTTAAATGTTTCTTCTCATTATAACCAATCATTTGGGGACAATAATCTTCAGGGGCTTCCACCTTCAGCTTTTGGAAGCTATGGAAATCAATACCCTTATCAGTTTTTCCATGGCCCTGGTGATAGGTTGATGAGATTAGGCCCTTCAGCTACAAAAGAAGCGAGGAAGAAGAGGATGGCAAGGCAGAGAAGGCTTTTATCTCATCATAGGCATAACAATCATCATCAGAATCATGCTTCTGACCCACATGCAAGATTGGGAAGTGATAATTGCACCACTGTTGTAGCTGCATCTCATGCAAATCCTGCCAATTGGATGTACTGGCAAACTATGGCTGGTGGGGCGGCTTCCTTGGCACCGGTTGTTCCGGTGGAGCAATTGCCGGCAGCCGGACAACAGGTGGTGGACCGGTCCGCCATGCAGACACAGAATTATCATCAGGGTAGGGTCGCTTCTGAGAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGGTTCCTTCTGCAAAAGGTTTTGAAGCAAAGCGATGTTGGAAGTTTGGGAAGAATTGTTTTACCAAAGAAAGAGGCAGAAACCCATTTGCCAGAACTAGAGGCAAGAGATGGAATTTCCATATCAATGGAAGACATTGGAACTTCTCGCATTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAACACTGGGGACTTTGTAAGAGCCAATGGACTCCAAGAAGGAGATTTCATTGTGATATATTCAGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAGGGGGCGAAACCAGAGACCAAGAAAGCAGGAAAATCGCAGAAAAACCAGCATGGGAACAATGCAGCAACTACAGCTGGCGCTGGTGCTAATAACGGCACACCATCTTCACCTAAGCAGAAAAATGAAAAAGCAGTGAATTAA 2367 0.4428 MDCEVELQGGDLHAGVVTETNPVGFGIMDDAETLAVAEREMWLNSDQDDLLGVNDTSMFYADFPPLPDFPCMSSSSSSSSTPALPVNNITYSTTTSSSSSSSSASSSSAASWAVLRSDVDIEEDAEKNNINIINNNNYNSYMQQNNDPLDATTTPAALSSTASMEISQQHLDPGLGANTVGDCMDDVMDTFGYMELLESNDFFDPSSIFQSEENPLPEFTQLPQLDEHAMGIHHRESTQQQGEEEDHHHNHHQLLVCNNNGEEIQGEEGAGAGAGAGAGDEMSMVFLEWLKSNKDSVSANDLRSVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNNNNNNINSQSNLLPQFQDPSQNQNTNTSSFAPESNACFNQTTPWLSSPQPFGTDQAPLMVSQMPFSQPMVGYVGDPYTNGATSNNMNSGGGTQTQNNNPYQTSPEYHMLESANSWPPSQLNVSSHYNQSFGDNNLQGLPPSAFGSYGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRLLSHHRHNNHHQNHASDPHARLGSDNCTTVVAASHANPANWMYWQTMAGGAASLAPVVPVEQLPAAGQQVVDRSAMQTQNYHQGRVASERRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISISMEDIGTSRIWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQGAKPETKKAGKSQKNQHGNNAATTAGAGANNGTPSSPKQKNEKAVN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3512g00001 788 Gene3D - 634 754 IPR015300 -
Gabi3512g00001 788 SUPERFAMILY DNA-binding pseudobarrel domain 637 733 IPR015300 -
Gabi3512g00001 788 CDD BfiI_C_EcoRII_N_B3 636 737 - -
Gabi3512g00001 788 ProSiteProfiles B3 DNA-binding domain profile. 638 740 IPR003340 GO:0003677
Gabi3512g00001 788 MobiDBLite consensus disorder prediction 344 404 - -
Gabi3512g00001 788 MobiDBLite consensus disorder prediction 538 557 - -
Gabi3512g00001 788 SMART B3_2 638 738 IPR003340 GO:0003677
Gabi3512g00001 788 FunFam B3 domain-containing transcription factor FUS3 634 749 - -
Gabi3512g00001 788 Pfam B3 DNA binding domain 639 735 IPR003340 GO:0003677
Gabi3512g00001 788 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 281 764 IPR044800 GO:0003700
Gabi3512g00001 788 MobiDBLite consensus disorder prediction 740 788 - -
Gabi3512g00001 788 MobiDBLite consensus disorder prediction 349 404 - -
Gabi3512g00001 788 MobiDBLite consensus disorder prediction 755 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3512g00001 Gabi-Chr3512 14570 17533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3512g00001 39 764 B3 DNA Binding Superfamily AT3G24650 46.581 1.39e-164 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3512g00001 B3 3.5e-17 CL0405