Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3508g00004 ATGGTGTTAGGTTGGAGAAGAAGGAAGAACAACCACCGTAAAGGTGGTGGCAAACCCAGCTTGGAGGTGGTGATTCCCAACCACTTCAGGTGTCCAATTTCTCTGGATTTGATGAAGGATCCTGTGACATTGTCTACTGGGATCACCTATGATAGAGAAAGCGTGGAAAGGTGGTTTGAAGATGGGAACTATACTTGTCCTGTTACAAACCAAATTGTGAGGAACTTTGACATGATTCCAAACCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTGGAAAATAAACAATATGGGGTTGAGAGGATTCCAACTCCAAGGATACCAATAAGTCCAATTGAGGTTGCTGAGCTTTTATTGCAAGTGAAGGACTCAGCAATATGTTTGGATCAATATGGTTGCTTAGAATTGGTGAAGAAAATGGAGAAGTGGGGTGCTGAGAGTGAGAGGAACAAGAAATGTATAGTGGAAAATGGAGCACCCGGTGCATTGGCTTCTGCATTTGATGCATTTGCAAATGATTCTGTTGACAGGAATGTGGTTGTTCTTGAGGAGATTTTGTCAGCACTCAATTGGGTGTTTCCACTTCAATTGGAGGCACAGAAATCTTTAGGGACTTGTGCTTCTTTACGTTGCATGGTTTGGTTCTTGAAGCACCAGGATCTCTCAGGGAGAGAAAAGTCTATTGTTGCATTGCAAGAGCTTCTTTCTTTTGGTGATGAGAAGAATGTGGAGGCTTTGTCAGAAATTGAAGGAGTCAATGAGCTCTTGGTGGAGTTCATCAACAAGAGAATTAGTCCAAAGATTACCAAAGCTTCACTCAAGGTTGTTTTTTTCTTGGTTTCATCATCTTCCCCTTCCAGTGAGAAAATGAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTCTATTGGACATTCTCATTGACTCAGAAAAGAGCCTGTGTGAGAAGGCTTTGGCTATTTTGGACTCCCTATGCAATTGTGAAGAAGGGAGGGACAAAGCTTATGGTAATGATCTAACAATTCCTGTATTGGTGAAGAAACTATTGAGAGTTTCACCATTGACCACAGATTACTCTGTCTCTGCAATTTGGAAGCTGTGCAAGTTTGGAGAGAAAGATGAAGGAAAAGCTCTTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTATTGCAGGTTGGTTGTGGTGATGAGACCAAGGAGAAAGCTACTGAACTTCTCAAACTGCTGAATCCTTATAGGGCTGATTTGGAATGCATAGACTCAGATTACAAGAATATTAAGAGATCATTTTAA 1311 0.4119 MVLGWRRRKNNHRKGGGKPSLEVVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFEDGNYTCPVTNQIVRNFDMIPNHSLRIMIQDWCVENKQYGVERIPTPRIPISPIEVAELLLQVKDSAICLDQYGCLELVKKMEKWGAESERNKKCIVENGAPGALASAFDAFANDSVDRNVVVLEEILSALNWVFPLQLEAQKSLGTCASLRCMVWFLKHQDLSGREKSIVALQELLSFGDEKNVEALSEIEGVNELLVEFINKRISPKITKASLKVVFFLVSSSSPSSEKMKLAFVELGLVSSLLDILIDSEKSLCEKALAILDSLCNCEEGRDKAYGNDLTIPVLVKKLLRVSPLTTDYSVSAIWKLCKFGEKDEGKALVEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRADLECIDSDYKNIKRSF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3508g00004 436 SUPERFAMILY ARM repeat 147 415 IPR016024 -
Gabi3508g00004 436 PANTHER WDSAM1 PROTEIN 23 416 IPR045185 GO:0061630
Gabi3508g00004 436 FunFam RING-type E3 ubiquitin transferase 25 96 - -
Gabi3508g00004 436 CDD RING-Ubox_PUB 26 78 IPR045210 -
Gabi3508g00004 436 SUPERFAMILY RING/U-box 20 101 - -
Gabi3508g00004 436 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Gabi3508g00004 436 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Gabi3508g00004 436 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Gabi3508g00004 436 Gene3D - 132 428 IPR011989 -
Gabi3508g00004 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 98 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3508g00004 Gabi-Chr3508 51968 53392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3508g00004 5 436 U-box Gene Family AT5G37490 43.764 8.03e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3508g00004 - - gmx:100794340 693.345