Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3505g00006 ATGGTTAACTTTGATGATTATGTGGAACCTTCCCCAACTACAGGGTCCCTTCCTAGGCTTCATCTAACCGCACATGGTTCTGTGACTTCTGCTGCATCCGCTACATTTCCTGCAACAAACGTATGCTTCAATACCAACAATGTTGATGACAGAAAATCTAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGTGGACTTCAACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGAAAAAGCTCAATCTTTTGCCTCACCACCATTAGTCAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGGTAAAATGGTTAGCTCAGGGGTTAATGCTCATGTTGAAGCCGATTTGGATGAATCTAACCACAGGGGAAACATTGCAACTGGGCTTCAAGCATCACAAGTTGAGGGTAGGGGCAGTGGACTTTCAGTTGCAGCTGAGAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACACCCTAACTGTGAAGTGAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAACTATTGTGTCTATGCAAGAAGAGAGATCGGACAAGGCTTCTTTGACTAGCCGAGATGATAAAGGATCCAATATATATGGCCAGATGTCTCACACAACTGAGCCCAACAGTACCCCAGAGTTATCACCTGTAGCAACAAATGATGATAGTCTAGAGGGTACGGGATTATTGTCAAACCAGAATAATGATGAGGTTGATGATGATGATCTCTTCTCAAAGCGAAGAAAAATGGATCTTGGAAATGCTGACATCACTCCTGTAATTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTCGGAGTTATTACAAATGCACGAATGCCGGTTGCCCTGTAAGAAAACATGTGGAGAGAGCATCCAATGATCCTAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGATCATCAGCTGCAGGTGCACAAACAAGAATTAGGCCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGTATTAGCCCTTCTGCTGAAAATAGTTCAAACAAGCAAGGGAGAATGATGCTTTCAGAATTTGGGGACGGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAACTCAAATCAATATGGTTCTAGAGATAATCAGAGTGATGGTACATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATAATAATGGGTCCTTGA 1551 0.4197 MVNFDDYVEPSPTTGSLPRLHLTAHGSVTSAASATFPATNVCFNTNNVDDRKSSFFEFKPHSRSNMVPVDFNNHASEKSTQIDGQEKAQSFASPPLVKSEIAVPSNELSLSSPGKMVSSGVNAHVEADLDESNHRGNIATGLQASQVEGRGSGLSVAAERASDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIVSMQEERSDKASLTSRDDKGSNIYGQMSHTTEPNSTPELSPVATNDDSLEGTGLLSNQNNDEVDDDDLFSKRRKMDLGNADITPVIKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASNDPKAVITTYEGKHNHDVPTARNSCHDMAGSSAAGAQTRIRPEESDTISLDLGMGISPSAENSSNKQGRMMLSEFGDGQTHTSNSNFKFVHTSAPVYFGVLNNNSNQYGSRDNQSDGTSLNHSAYPCPQNMGRIIMGP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3505g00006 516 Pfam WRKY DNA -binding domain 163 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 Pfam WRKY DNA -binding domain 338 394 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 SUPERFAMILY WRKY DNA-binding domain 329 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 ProSiteProfiles WRKY domain profile. 157 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 81 435 IPR044810 GO:0003700
Gabi3505g00006 516 FunFam WRKY transcription factor 33 324 390 - -
Gabi3505g00006 516 FunFam WRKY transcription factor 152 222 - -
Gabi3505g00006 516 MobiDBLite consensus disorder prediction 249 291 - -
Gabi3505g00006 516 SUPERFAMILY WRKY DNA-binding domain 160 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 Gene3D WRKY domain 154 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 Gene3D WRKY domain 322 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 SMART WRKY_cls 337 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 SMART WRKY_cls 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 ProSiteProfiles WRKY domain profile. 332 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00006 516 MobiDBLite consensus disorder prediction 235 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3505g00006 Gabi-Chr3505 86696 91234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3505g00006 9 516 WRKY Transcription Factor Family AT4G26640 54.423 6.87e-169 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3505g00006 WRKY 6.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3505g00006 - - gmx:100781491 882.093