LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3505g00006	ATGGTTAACTTTGATGATTATGTGGAACCTTCCCCAACTACAGGGTCCCTTCCTAGGCTTCATCTAACCGCACATGGTTCTGTGACTTCTGCTGCATCCGCTACATTTCCTGCAACAAACGTATGCTTCAATACCAACAATGTTGATGACAGAAAATCTAGCTTCTTTGAGTTTAAACCACACAGTAGATCAAATATGGTTCCTGTGGACTTCAACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGAAAAAGCTCAATCTTTTGCCTCACCACCATTAGTCAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGGTAAAATGGTTAGCTCAGGGGTTAATGCTCATGTTGAAGCCGATTTGGATGAATCTAACCACAGGGGAAACATTGCAACTGGGCTTCAAGCATCACAAGTTGAGGGTAGGGGCAGTGGACTTTCAGTTGCAGCTGAGAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACACCCTAACTGTGAAGTGAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAACTATTGTGTCTATGCAAGAAGAGAGATCGGACAAGGCTTCTTTGACTAGCCGAGATGATAAAGGATCCAATATATATGGCCAGATGTCTCACACAACTGAGCCCAACAGTACCCCAGAGTTATCACCTGTAGCAACAAATGATGATAGTCTAGAGGGTACGGGATTATTGTCAAACCAGAATAATGATGAGGTTGATGATGATGATCTCTTCTCAAAGCGAAGAAAAATGGATCTTGGAAATGCTGACATCACTCCTGTAATTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTCGGAGTTATTACAAATGCACGAATGCCGGTTGCCCTGTAAGAAAACATGTGGAGAGAGCATCCAATGATCCTAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGATCATCAGCTGCAGGTGCACAAACAAGAATTAGGCCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGTATTAGCCCTTCTGCTGAAAATAGTTCAAACAAGCAAGGGAGAATGATGCTTTCAGAATTTGGGGACGGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAACTCAAATCAATATGGTTCTAGAGATAATCAGAGTGATGGTACATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATAATAATGGGTCCTTGA	1551	0.4197	MVNFDDYVEPSPTTGSLPRLHLTAHGSVTSAASATFPATNVCFNTNNVDDRKSSFFEFKPHSRSNMVPVDFNNHASEKSTQIDGQEKAQSFASPPLVKSEIAVPSNELSLSSPGKMVSSGVNAHVEADLDESNHRGNIATGLQASQVEGRGSGLSVAAERASDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIVSMQEERSDKASLTSRDDKGSNIYGQMSHTTEPNSTPELSPVATNDDSLEGTGLLSNQNNDEVDDDDLFSKRRKMDLGNADITPVIKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASNDPKAVITTYEGKHNHDVPTARNSCHDMAGSSAAGAQTRIRPEESDTISLDLGMGISPSAENSSNKQGRMMLSEFGDGQTHTSNSNFKFVHTSAPVYFGVLNNNSNQYGSRDNQSDGTSLNHSAYPCPQNMGRIIMGP	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3505g00006	516	Pfam	WRKY DNA -binding domain	163	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	Pfam	WRKY DNA -binding domain	338	394	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	SUPERFAMILY	WRKY DNA-binding domain	329	397	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	ProSiteProfiles	WRKY domain profile.	157	221	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	81	435	IPR044810	GO:0003700
	Gabi3505g00006	516	FunFam	WRKY transcription factor 33	324	390	-	-
	Gabi3505g00006	516	FunFam	WRKY transcription factor	152	222	-	-
	Gabi3505g00006	516	MobiDBLite	consensus disorder prediction	249	291	-	-
	Gabi3505g00006	516	SUPERFAMILY	WRKY DNA-binding domain	160	221	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	Gene3D	WRKY domain	154	222	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	Gene3D	WRKY domain	322	398	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	SMART	WRKY_cls	337	396	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	SMART	WRKY_cls	162	220	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	ProSiteProfiles	WRKY domain profile.	332	397	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi3505g00006	516	MobiDBLite	consensus disorder prediction	235	297	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3505g00006	Gabi-Chr3505	86696	91234	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3505g00006	9	516	WRKY Transcription Factor Family	AT4G26640	54.423	6.87e-169	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi3505g00006		WRKY	6.8e-26	CL0274