Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3505g00005 ATGGTTCCTGTGGACTTCAACAACCATGCAAGTGAAAAATCTACTCAAATAGATGGTCAAGAAAAAGCTCAATCTTTTGCCTCACCACCATTAGTCAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGGTAAAATGGTTAGCTCAGGGGTTAATGCTCATGTTGAAGCCGATTTGGATGAATCTAACCACAGGGGAAACATTGCAACTGGGCTTCAAGCATCACAAGTTGAGGGTAGGGGCAGTGGACTTTCAGTTGCAGCTGAGAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACACCCTAACTGTGAAGTGAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAACTATTGTGTCTATGCAAGAAGAGAGATCGGACAAGGCTTCTTTGACTAGCCGAGATGATAAAGGATCCAATATATATGGCCAGATGTCTCACACAACTGAGCCCAACAGTACCCCAGAGTTATCACCTGTAGCAACAAATGATGATAGTCTAGAGGGTACGGGATTATTGTCAAACCAGAATAATGATGAGGTTGATGATGATGATCTCTTCTCAAAGCGAAGAAAAATGGATCTTGGAAATGCTGACATCACTCCTGTAATTAAGCCTATCCGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGTAAATATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTCGGAGTTATTACAAATGCACGAATGCCGGTTGCCCTGTAAGAAAACATGTGGAGAGAGCATCCAATGATCCTAAAGCTGTAATAACAACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAGTTGCCATGACATGGCAGGATCATCAGCTGCAGGTGCACAAACAAGAATTAGGCCAGAAGAAAGTGATACTATTAGCCTTGACCTTGGGATGGGTATTAGCCCTTCTGCTGAAAATAGTTCAAACAAGCAAGGGAGAATGATGCTTTCAGAATTTGGGGACGGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAACTCAAATCAATATGGTTCTAGAGATAATCAGAGTGATGGTACATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACATGGGAAGAATAATAATGGGTCCTTGA 1356 0.4204 MVPVDFNNHASEKSTQIDGQEKAQSFASPPLVKSEIAVPSNELSLSSPGKMVSSGVNAHVEADLDESNHRGNIATGLQASQVEGRGSGLSVAAERASDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGTIVSMQEERSDKASLTSRDDKGSNIYGQMSHTTEPNSTPELSPVATNDDSLEGTGLLSNQNNDEVDDDDLFSKRRKMDLGNADITPVIKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASNDPKAVITTYEGKHNHDVPTARNSCHDMAGSSAAGAQTRIRPEESDTISLDLGMGISPSAENSSNKQGRMMLSEFGDGQTHTSNSNFKFVHTSAPVYFGVLNNNSNQYGSRDNQSDGTSLNHSAYPCPQNMGRIIMGP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3505g00005 451 MobiDBLite consensus disorder prediction 184 226 - -
Gabi3505g00005 451 Pfam WRKY DNA -binding domain 273 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 Pfam WRKY DNA -binding domain 98 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 SUPERFAMILY WRKY DNA-binding domain 95 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 FunFam WRKY transcription factor 87 157 - -
Gabi3505g00005 451 FunFam WRKY transcription factor 33 259 325 - -
Gabi3505g00005 451 MobiDBLite consensus disorder prediction 8 23 - -
Gabi3505g00005 451 Gene3D WRKY domain 257 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 Gene3D WRKY domain 89 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 ProSiteProfiles WRKY domain profile. 92 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 MobiDBLite consensus disorder prediction 170 232 - -
Gabi3505g00005 451 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3505g00005 451 SMART WRKY_cls 97 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 SMART WRKY_cls 272 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 SUPERFAMILY WRKY DNA-binding domain 264 332 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3505g00005 451 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 49 370 IPR044810 GO:0003700
Gabi3505g00005 451 ProSiteProfiles WRKY domain profile. 267 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3505g00005 Gabi-Chr3505 86696 91234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3505g00005 40 451 WRKY Transcription Factor Family AT4G26640 58.670 2.32e-158 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3505g00005 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3505g00005 - - gmx:100127383 783.097